Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D15
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z77655-8|CAB01138.3|  402|Caenorhabditis elegans Hypothetical pr...    36   0.010
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    29   1.2  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    27   8.2  

>U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical
           protein ZC8.6 protein.
          Length = 593

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -1

Query: 310 QAETAIDNGIFPERIYQGSSGSYFVKN 230
           +A  AI NG +P+RI QGSSGSYFVKN
Sbjct: 116 EACRAIHNGHYPQRIAQGSSGSYFVKN 142


>Z77655-8|CAB01138.3|  402|Caenorhabditis elegans Hypothetical
           protein C56A3.8a protein.
          Length = 402

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -1

Query: 337 DPQFSELVLQAETAIDNGIFPERIYQGSSGSYFVKNAGG 221
           D +F  +  +A+ AI+ GI P  I +GSSGSYFV    G
Sbjct: 33  DDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEG 71


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 333 PSSASWYYRRRR-PLITASSRRGYTKDP 253
           P  ASW++RRR  P +TAS+     K+P
Sbjct: 152 PQQASWFFRRRSLPSLTASAPGNTLKEP 179


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 91  EVCDYRSTIVFDNRTITVCKLIVTINYSRISTT 189
           E+CDY     ++  T+T     VT   S +STT
Sbjct: 274 EICDYSGVCGYEKPTLTTEPTPVTTEKSTVSTT 306


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 276 GKMPLSMAVSACSTSSLNWGSSH*NGVT 359
           GK PL++    C T  L  GSS  NG +
Sbjct: 21  GKSPLALLAKTCETIGLPEGSSKKNGAS 48


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 276 GKMPLSMAVSACSTSSLNWGSSH*NGVT 359
           GK PL++    C T  L  GSS  NG +
Sbjct: 21  GKSPLALLAKTCETIGLPEGSSKKNGAS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,241,182
Number of Sequences: 27780
Number of extensions: 221137
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)