Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D11
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129...    29   2.6  
01_03_0196 - 13696056-13697448,13697676-13697713                       28   6.0  

>09_02_0622 -
           11310941-11311472,11312776-11312813,11312875-11312926,
           11313891-11314270
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +2

Query: 302 YTLSANSQVMTTEFSLYSLLNIFIYTFLVFHH*IIVTPFDGTEMTT 439
           Y LS  S V T +  L  LLN     + + H   I +P DGT +TT
Sbjct: 283 YMLSNVSLVATNDSVLPPLLNAIEIYYSIPHDDTITSPDDGTHVTT 328


>01_03_0196 - 13696056-13697448,13697676-13697713
          Length = 476

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
 Frame = +2

Query: 254 WVLLLRNEHSSYLNIYYTLSANSQVMTTEFSLYSLLNI-FIYTFLVFHH*IIVTPFDGTE 430
           ++ ++ +  S +L +   ++A S VM  ++++  L+N  +I  F++    +I+  F    
Sbjct: 81  YIRMMHSTMSKFLGLETYITAASLVMA-DYAVLLLINTRYIGVFIIP---VILLVFIAAL 136

Query: 431 MTTMVLYVKRIQ*LNQQSIVKQFIKVHVPYTFWLCKIEI--CLLQRMTGPIV 580
            T   L+ K    + Q   + +   +HVP T WL K+    C LQ ++  I+
Sbjct: 137 CTK--LWDKSSPYIQQDYRISRVSLLHVPNTEWLLKLATLPCWLQLLSSTIL 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,199
Number of Sequences: 37544
Number of extensions: 247387
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)