Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D11
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    30   1.3  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   9.3  

>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = +2

Query: 251 GWVLLLRNEHSSYLNIYYTLSANSQVMTTEFSLYSLLNIFIYTFLVFHH 397
           GW+LL  N+H+   +  +T +  S+++  E +L+ +  +FI + ++ H+
Sbjct: 91  GWILLPGNDHTKIYS-EFTTNTTSEMIIIEKTLWDVPYLFIGSVMLTHY 138


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 269  RNEHSSYLNIYYTLSANSQVMTTEFSLYSLL 361
            RNE   YLN   TLS N +   TE ++  ++
Sbjct: 1614 RNEQEDYLNSLKTLSQNIEYWATESTILKMI 1644


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 269  RNEHSSYLNIYYTLSANSQVMTTEFSLYSLL 361
            RNE   YLN   TLS N +   TE ++  ++
Sbjct: 1614 RNEQEDYLNSLKTLSQNIEYWATESTILKMI 1644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,912
Number of Sequences: 27780
Number of extensions: 261820
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)