Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D11
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    28   0.071
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    28   0.094
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
 Frame = +2

Query: 260 LLLRNEHSSYLNIYYTLSANSQVMT----------TEFSLYSLLNIFIYTFLVFHH*IIV 409
           +LLR  +S     Y TL+     MT          TE  + + LN  ++ F +      +
Sbjct: 237 ILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFCLLDVQWRI 296

Query: 410 TPFDGTEMTT-MVLYVKRIQ*----LNQQSIVKQFIKVHVPYTFWLCKIEICLLQRMTGP 574
            PF+G +M   MV Y K +      L   SI++   ++HV    W+  +   +L+   G 
Sbjct: 297 -PFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTWISSVTESVLKSKIGQ 355

Query: 575 IVII 586
           + +I
Sbjct: 356 VFLI 359


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 0.094
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 257 VLLLRNEHSSYLNIYYTLSANSQVMTTEFSLYSLLNIFIYTFLVF 391
           V+ ++ ++ SYL++   LSA+  V T   S+ +LL    Y  LVF
Sbjct: 101 VMNIQKDNKSYLSLRSLLSADVAVATPLISMGALLGKTTYMQLVF 145


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 129 FLALCISYWVLKISRXKQI 73
           FLA+ + YW   +SR ++I
Sbjct: 435 FLAINVFYWFAYLSRSERI 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,063
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)