Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D10
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   3.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   4.5  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.5  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    26   6.0  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   7.9  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 369 LMLIYVRLPSRLDVSSMYRDPRKDSCDSCRMTTP 470
           L+ IY RL   LD++ +YR  R  S  S   + P
Sbjct: 264 LVSIYSRLRECLDIAQLYRTSRIKSASSHNFSVP 297


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 399 DLANEHILASEQALKLFHPELPDEMEREILKQFIKSKYDDLRELNDA 259
           +  NE I   ++ ++  H +   EM+ E + +F  S YD   +++ A
Sbjct: 522 EAVNEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTNEQVSTA 568


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 657 DNEYEAKYQESYRKAIETFDQRRNR 583
           D+E +  YQE+Y KA    D  R R
Sbjct: 752 DDERDKAYQEAYAKAKNVIDAERER 776


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 648 YEAKYQESYRKAIETFDQR 592
           Y+ + +ESY+K I+ FD++
Sbjct: 179 YDIRTEESYKKVIDEFDEK 197


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 297 KSKYDDLRELNDAANETAIATAVNVYV-EKMEKATEFKGWWIPTLGIPYLVNLAN 136
           K  Y  LR   DA      A  +  Y  + +E+  E+K W I   G+P  + ++N
Sbjct: 430 KIPYLQLRVSPDAEEIGVDADQIGEYAFDYIEERREYKHWKISPAGVPEEIIISN 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,163
Number of Sequences: 5004
Number of extensions: 55056
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)