Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_D10
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0492 - 8861472-8861517,8862672-8862781,8862889-8863059,886... 31 1.2
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 30 2.0
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 30 2.0
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 29 2.7
01_04_0005 - 15000085-15000363 29 2.7
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 28 6.2
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107... 28 6.2
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 28 6.2
06_03_0720 - 23858394-23858883,23860318-23860727 28 8.2
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531... 28 8.2
>03_02_0492 -
8861472-8861517,8862672-8862781,8862889-8863059,
8863158-8863262,8863342-8863431,8863719-8863813,
8863933-8864101,8864193-8864345,8864562-8864639,
8864883-8864957,8865076-8865098,8865181-8865268,
8865397-8865432
Length = 412
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Frame = -2
Query: 405 PNDLANEHILASEQALKLFHPELPDEMEREILKQFIKSKYDDLRELNDAANETAIATAVN 226
P ++NEHILA E+ ++ +L E +Q S+ LR+ + A +
Sbjct: 128 PVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSHAAS 187
Query: 225 VYVEKMEKATEFKGWWIPTLGIPYLVNLANRSS--YH-EEAKE-AALLNFYSNRRDRMNS 58
+ EK E + IPY + S YH +EA E AA F R+++ S
Sbjct: 188 LVAEKKELEEKIAALTKKASDIPYFTGKLHEISFPYHADEASEFAARKAFSMEDREKLES 247
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -2
Query: 405 PNDLANEHILASEQALKLFHPELPDEMEREILKQFIKSKYDDLR 274
P +A + +E++ + ELP +R ++ FI++KY+D R
Sbjct: 78 PEQVAFIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEDKR 121
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -2
Query: 657 DNEYEAKYQESYRKAIETFDQRRNRPTEFPEDVFKLSLMQHMAAQFINLQAINRSKNRKQ 478
D + K S+ + D + +E P V+KL L++++ A + + + ++S N
Sbjct: 520 DKMHLPKQAFSHTLCLRVLDLGGRQVSELPSSVYKLKLLRYLDASSLRISSFSKSFNHLL 579
Query: 477 FMMAL 463
+ AL
Sbjct: 580 NLQAL 584
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 507 AINRSKNRKQFMMALSFYTN-HMSLFWDPDTCCLHPNDLANEHILASEQAL 358
A + K K+ + AL+ Y N H L D D C HP D++ + A + A+
Sbjct: 5 ASTKVKKFKKNVAALTSYGNPHARLINDVDEACNHPGDVSGDVAKAFDSAV 55
>01_04_0005 - 15000085-15000363
Length = 92
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 534 MAAQFINLQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCL 409
M + I + I RS+N +A TN S+FW ++C L
Sbjct: 39 MGGRDIRVSKIQRSQNNVSHFLANRGRTNSCSVFWPDESCNL 80
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = -2
Query: 384 HILASEQALKLFHPELPDEMEREILKQFIKSKYDDLRELNDAANETAIATAVNVYVEKME 205
H+L QAL +P L + E+ + F + L L D ET V + E
Sbjct: 378 HMLHMHQALTEAYPVLQEVFSGELKESFTGELHKILHTLKDGTKETLDQLRVQIQSYSSE 437
Query: 204 KATEFKG-WWIPTLGIPYLVNLANRS 130
E G + T I Y+++L +
Sbjct: 438 DMPEGGGIHLVTTYLIRYIMSLTQNT 463
>05_07_0277 -
28909502-28909621,28910053-28910583,28910629-28910721,
28910758-28911501
Length = 495
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = -2
Query: 378 LASEQALKLFHPELPDEMEREILKQFIKSKYDDLRE--LNDAANETAIATAVNVYVEKME 205
LA Q L + + E LK K K + ++ LND + +++ N YVE E
Sbjct: 219 LAKLQVLSAYIIGVTHESSISELKPLKKLKVQEAKDAILNDKHDLVSLSYQWNTYVENAE 278
Query: 204 KATEFKGWWIP---TLGIPYLVNLANRSSYHEEA 112
+ + G +P T PYL +L + ++ +A
Sbjct: 279 QIISYPGAKLPQWMTWREPYLKSLLHIKLFNMKA 312
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -2
Query: 339 LPDEMEREILKQFIKSKY-DDLRELNDA--ANETAIATAVNVYVEKMEKATEFKGWWIPT 169
LP++ ERE +K+F+K K + REL A A + AI E E +K + + T
Sbjct: 250 LPED-EREKMKEFLKEKVRERKRELKQAKEARKKAIDDMDPKIKEAFENIQFYKFYPVKT 308
Query: 168 LGIPYLVNLANR 133
L P + N+ R
Sbjct: 309 LDTPDVSNVKAR 320
>06_03_0720 - 23858394-23858883,23860318-23860727
Length = 299
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 630 ESYRKAIETFDQRRNRPTEFPE 565
ES ++ET D RR+RP E PE
Sbjct: 38 ESTESSLETDDSRRSRPPENPE 59
>02_05_0761 -
31550936-31551020,31551641-31552666,31553083-31553117,
31554921-31555039,31555215-31555331,31556131-31556205,
31556885-31557017
Length = 529
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 300 IKSKYDDLRELNDAANETAIATAVNVYVEKMEKATE--FKGWWIP 172
+K + DDL+ ND ++ A T N +++ K + F W +P
Sbjct: 414 VKQRNDDLKISNDGLDDNADVTCSNSNIDEYHKTQQEYFVPWHLP 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,151
Number of Sequences: 37544
Number of extensions: 331628
Number of successful extensions: 971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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