Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D10
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2184|AAF55296.1| 1114|Drosophila melanogaster CG6725-PA...    31   2.0  
L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike n...    29   8.0  
AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p pro...    29   8.0  
AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA...    29   8.0  

>AE014297-2184|AAF55296.1| 1114|Drosophila melanogaster CG6725-PA
           protein.
          Length = 1114

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -2

Query: 357 KLFHPELPDEME-----REILKQFIKSKYDDLRELNDAANET 247
           ++FH ELPDEME      +++ Q +   +   R+L  ++NET
Sbjct: 644 EVFHTELPDEMEELLDLHQVVDQLVDHTHRSKRDLPASSNET 685


>L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike
           nuclear protein protein.
          Length = 857

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = -2

Query: 483 KQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHILASEQALKLFHPELPDEMEREILKQ 304
           ++F  A +FY    S         L P++  ++ +L     L L  PE PDE   E+ K+
Sbjct: 647 REFKRAPAFYALRHSGPPHIPKVFLEPHEELSDELLEKRFKLMLM-PEEPDEGANELPKR 705

Query: 303 FIKSKYDDLRELNDAANETAIATAVNVYVEKMEK 202
             K  Y+   + +D    +     +   +EK +K
Sbjct: 706 VPKDVYEFNTDEDDPVETSEDEIPIKQIIEKAKK 739


>AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p
           protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = -2

Query: 483 KQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHILASEQALKLFHPELPDEMEREILKQ 304
           ++F  A +FY    S         L P++  ++ +L     L L  PE PDE   E+ K+
Sbjct: 647 REFKRAPAFYALRHSGPPHIPKVFLEPHEELSDELLEKRFKLMLM-PEEPDEGANELPKR 705

Query: 303 FIKSKYDDLRELNDAANETAIATAVNVYVEKMEK 202
             K  Y+   + +D    +     +   +EK +K
Sbjct: 706 VPKDVYEFNTDEDDPVETSEDEIPIKQIIEKAKK 739


>AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA
           protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = -2

Query: 483 KQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHILASEQALKLFHPELPDEMEREILKQ 304
           ++F  A +FY    S         L P++  ++ +L     L L  PE PDE   E+ K+
Sbjct: 647 REFKRAPAFYALRHSGPPHIPKVFLEPHEELSDELLEKRFKLMLM-PEEPDEGANELPKR 705

Query: 303 FIKSKYDDLRELNDAANETAIATAVNVYVEKMEK 202
             K  Y+   + +D    +     +   +EK +K
Sbjct: 706 VPKDVYEFNTDEDDPVETSEDEIPIKQIIEKAKK 739


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,954,247
Number of Sequences: 53049
Number of extensions: 573832
Number of successful extensions: 1623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)