Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D09
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   3.8  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   6.6  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    25   8.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   8.8  

>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 483 NDWKCLAIDAEAAGRISSMISAALL 557
           N WK + IDA AA   S+MIS  +L
Sbjct: 17  NTWKRIGIDAFAATAASAMISPFIL 41


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 399 RNSNRYSGYEIDFTDHWNILEMIV*XANMKSPKYL 295
           R   ++S  ++DF  HW +L+  +     KS   L
Sbjct: 10  RAPRKFSANQVDFATHWEVLQRAIGDIFQKSTSQL 44


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 242 LSNCMIPAEIFTGFYYLK-RYLGDFIFAN*TIISS 343
           L+ C IP   + G+Y+L+  YL  F F + TI  S
Sbjct: 779 LARCAIPELDWVGYYHLRMAYLEKFCFKDSTIPKS 813


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 601 NHGSVIGEAMNQFLNNNAAEIIE 533
           NHG ++G A+NQ +N +     E
Sbjct: 292 NHGHILGVAINQSINEDMTHYAE 314


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 578 SNEPVPEQQCG*DHRGNATGRLGVNRQAFPVVHKRRLHEDTHRRVAQTLDEPQSLLKVTI 399
           + EP P++    D  GN  GR+ V++Q    +  R++ +   R V +  D     +++  
Sbjct: 251 TQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQTRKM-KGLKRSVEEREDSENEEVEIEE 309

Query: 398 EIAID 384
           ++  D
Sbjct: 310 DVISD 314


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 553 NAAEIIEEMRPAASASIAKHFQSFINGAFTKIPIDVWLK 437
           NAA ++  + P AS+  A+   S+IN    ++   ++ K
Sbjct: 146 NAASVLNNLFPPASSRNAQLTASYINELLLELSFSIYTK 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,067
Number of Sequences: 5004
Number of extensions: 39263
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)