Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D09
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    36   3e-04
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.34 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    26   0.34 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    26   0.34 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.78 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   9.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 586 IGEAMNQFLNNNAAEIIEEMRPAASASIAKHFQSFINGAFTKIPIDVWLKP 434
           +GE MN+F+N N+  + +E++ A   + +  F    N  F ++P D    P
Sbjct: 202 LGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKIFPP 252


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 282 KPVNISAGIIQLLKIWLF 229
           KP++I+  +I+++ IWLF
Sbjct: 161 KPLSINGALIRIIAIWLF 178


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 282 KPVNISAGIIQLLKIWLF 229
           KP++I+  +I+++ IWLF
Sbjct: 127 KPLSINGALIRIIAIWLF 144


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 282 KPVNISAGIIQLLKIWLF 229
           KP++I+  +I+++ IWLF
Sbjct: 37  KPLSINGALIRIIAIWLF 54


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 512  RGGRSHFLDDLSRIVVQELVHCFPN 586
            R  RSH   D  R + +EL HC PN
Sbjct: 1674 RSIRSHSTWDPRRHMYEELNHCAPN 1698


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 522 GRISSMISAALLFRNWFIASPIT-LPWLTV 608
           GR++S  +A ++   WF  +P T LP L V
Sbjct: 164 GRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 522 GRISSMISAALLFRNWFIASPIT-LPWLTV 608
           GR++S  +A ++   WF  +P T LP L V
Sbjct: 164 GRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = -2

Query: 479  KRRLHEDTHRRVAQTLDE----PQSLLKV-----TIEIAIDILDMKSILQIT 351
            K R H  T   + QTLD+    P +L K+     T  +A D +D+  +  ++
Sbjct: 877  KERTHRPTFANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLTSVS 928


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 264 QKYSQVFIISKDI 302
           QK+ +VF+++KDI
Sbjct: 400 QKHIKVFVVNKDI 412


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 358 RSLEYTGNDC 329
           R+ EYTG+DC
Sbjct: 113 RNEEYTGDDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,031
Number of Sequences: 438
Number of extensions: 2968
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)