Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D07
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    29   0.48 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   4.5  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   7.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   7.8  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   7.8  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 509 KSAPNTTDNVDIRNKQEINVKRVAGSQKKILLRNPTDKLPALPGSEV 369
           K+A    DNV     ++  V +    QKK L   PT K  A P S+V
Sbjct: 632 KNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDV 678


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 304 IFLFFTTAGCTTYVLDMALGVCTSDPGNAGSLSVGFLNKIFFCDP 438
           I  FF T+G   +     L    S  GN      GF N IF C P
Sbjct: 64  IIFFFITSGLAYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFLCGP 108


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 506 SAPNTTDNV-DIRNKQEINVKRVA-GSQKKILLRNPTDKLPALPGSEVHTPRAMSNTYVV 333
           S PN   N  + R      ++++  G+++K L RNP+  L ++ GSE+       N    
Sbjct: 230 SCPNPLTNPQEFRVAASAKIQQLLQGNREKFLSRNPSKPLSSVYGSELINQAGDDNNKPF 289

Query: 332 H 330
           H
Sbjct: 290 H 290


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 551 LSKQTCTDYDSERAKSAPNTTDNVDIRNKQEINVKRVAGSQKKILLRNP 405
           ++ Q C         + P T++   ++   +I+ K V G QK +LL  P
Sbjct: 181 VASQPCAAPGPASLITEPETSNQEYLQMAVDISAKIVNGKQKPVLLAGP 229


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
            Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -3

Query: 503  APNTTDNVDIRNKQEINVKRVAGSQKKILLRNPTDKLPALPGSEVHTPRAMSNTY 339
            AP ++ +V     QE+  KR+A  +K+ L  NPT    +    + ++ +A+   +
Sbjct: 849  APTSSYSVRQMLSQELLKKRLADIKKQTLTDNPTSSNSSRKRKDFNSGKAIKRDF 903


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
 Frame = -3

Query: 569 AFGAPKLSKQT--CTDYDSERAKSAPNTTDNVDIRNKQEINVKRVAGS-QKKILLRNPTD 399
           A  AP   +Q    +++ + +A+ A N    +    K++   KR AG  Q +I+ R    
Sbjct: 204 ASAAPSNPRQPPPTSNFSNRKARYASNGLVQLQTGPKRD---KRSAGEVQDEIMKRRQNS 260

Query: 398 KLPALPGSEVHTPRAMSN---TYVVHPAVVKNKKIQPNS 291
            +     S+  TPR +SN   +YV  PA+   K+ +PNS
Sbjct: 261 SI-----SQAATPRTVSNSETSYVGSPAL---KQSKPNS 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,275
Number of Sequences: 5004
Number of extensions: 44841
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)