Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D07
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0045 + 314151-314323,314426-314488,314568-314684,314773-31...    30   1.5  
09_06_0296 - 22104796-22104916,22104967-22105022,22105094-221051...    28   6.0  
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    27   8.0  
01_03_0150 + 13220224-13220468,13221903-13222124,13222164-132223...    27   8.0  

>05_01_0045 +
           314151-314323,314426-314488,314568-314684,314773-314887,
           315013-315171,315612-315716,315818-316081
          Length = 331

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 304 IFLFFTTAGCTTYVLDMALGVCTSDPGNAGSLSVGFLNKIFFC 432
           +F+F+  A  T  +L +AL +   +  NA S+S+  L K+FFC
Sbjct: 36  VFIFYRQAAATLLLLPLALLL---ERKNARSMSLMLLIKLFFC 75


>09_06_0296 -
           22104796-22104916,22104967-22105022,22105094-22105189,
           22106431-22106505,22107339-22107639,22107728-22107798,
           22109340-22109468,22109566-22109760,22109916-22110082,
           22110175-22110271,22110689-22110697
          Length = 438

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 119 TLTTKINNVKLNLDYVGPSWIVMMHNISLLMIPNRWM 229
           T+ T I   +L L    P W++  H I++L++  RW+
Sbjct: 190 TVMTDITTTQLKLLLDDP-WVIFGHRITILVVSVRWI 225


>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 447 KSCRVAEKDFVKKSYRQTSRITRV-GSAY 364
           K C++   DF K+S R  SRI +V GS Y
Sbjct: 93  KGCKLKYDDFFKESQRLASRIDQVLGSRY 121


>01_03_0150 +
           13220224-13220468,13221903-13222124,13222164-13222376,
           13222549-13222691,13225813-13226387,13226776-13227155,
           13227256-13227342,13227469-13227799,13227880-13228290,
           13228373-13228432,13228561-13228761
          Length = 955

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 423 LFLRPCNSFDID--FLFISYIYVIGGVGSGLCTFTVIISTCLFR 548
           LF+   +SF  D  F  +SY  +I   G  +C  T + +T L+R
Sbjct: 498 LFVGSISSFGADHNFAAVSYPLLISSAGLIVCLITTLFATDLYR 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,697
Number of Sequences: 37544
Number of extensions: 256001
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)