Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D07
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51995-2|AAA96071.1|  291|Caenorhabditis elegans F-box a protein...    28   4.1  
Z82282-6|CAB05273.1|  147|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U51995-2|AAA96071.1|  291|Caenorhabditis elegans F-box a protein
           protein 52 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +2

Query: 59  SVVNI*NYYCLLNIIV*FKKTLTTKINNVKLNLDYVGPSWIVMMHN-ISLLMIPNRWMKD 235
           ++V++  Y C LN+++   + L TK  N   N ++ G  +I+   N +   +   + +  
Sbjct: 36  NIVDLILYDCKLNLMLDGIEILYTKTANGSSNANHNGQKYIIDRKNFVDRALKDLKIVSK 95

Query: 236 HSTGRIHK*HRRDKVNDVMSLVEFF 310
           H+       + + + N V SL+EFF
Sbjct: 96  HAQNIKFANNTKYRRNIVSSLIEFF 120


>Z82282-6|CAB05273.1|  147|Caenorhabditis elegans Hypothetical
           protein T07G12.8 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 150 NFTLFIFVVKVFLNYTIMFNKQ 85
           NF LF + +K+F+NY ++   +
Sbjct: 56  NFILFFYKIKIFMNYQLLLRNR 77


>Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 464 QEINVKRVAGSQKKILLRNPTDKLPALPGSEVHTPRAMSNTYVVHPAVVKNKKIQPNS 291
           Q + +    GSQK IL R P      L  S   TP+    + V     +KN+  Q +S
Sbjct: 300 QNLAISTTVGSQKDILHREPVKGNSVLEASTCSTPK-KDTSIVDFGTYIKNQVHQTSS 356


>Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 464 QEINVKRVAGSQKKILLRNPTDKLPALPGSEVHTPRAMSNTYVVHPAVVKNKKIQPNS 291
           Q + +    GSQK IL R P      L  S   TP+    + V     +KN+  Q +S
Sbjct: 300 QNLAISTTVGSQKDILHREPVKGNSVLEASTCSTPK-KDTSIVDFGTYIKNQVHQTSS 356


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 503 APNTTDNVDIRNKQEINVKRVAGSQKKILLRNPTDKLPALPGSEVHTPRAMSN 345
           A  T+D+ +IR+  E +V R     ++ L  NP D    +  SE+ T  ++ N
Sbjct: 385 AQKTSDSQEIRDTVERSVARFCTKNRENLHHNPLDVSINVAASEMPTFNSLYN 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,794
Number of Sequences: 27780
Number of extensions: 257510
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)