Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D07
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 58  ECSKYLKLLLFIKHNCIIQENFNNKDK 138
           E  K L  ++FI+H+   Q+ FN +D+
Sbjct: 450 ELEKALHNVMFIQHHIQRQDEFNAEDQ 476


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 407  PTDKLPALPGSEVHT 363
            P  KLP +PGS  +T
Sbjct: 1649 PNRKLPPVPGSNYNT 1663


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 104 QLCLIXXXNFKYLLHSSQLTINVDPNNV 21
           QLC I   +F Y +   +   N  PN+V
Sbjct: 150 QLCHIEIESFGYTMRDIRYKWNEGPNSV 177


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 104 QLCLIXXXNFKYLLHSSQLTINVDPNNV 21
           QLC I   +F Y +   +   N  PN+V
Sbjct: 89  QLCHIEIESFGYTMRDIRYKWNEGPNSV 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -3

Query: 497 NTTDNVDIRNKQEINVKRVAGSQKKILLRNPTDKLPALPGSEVHTP 360
           N +  VD+ + + ++VKR  G+   I++ N +     +  +++H P
Sbjct: 483 NGSLEVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHPP 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,687
Number of Sequences: 438
Number of extensions: 3015
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)