Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D02
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    29   0.99 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   4.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.2  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 263 FKYKTFFVFITLICLFFVNLFAGSLFGYSSMDR 165
           F  K FF+   + CLFF  LF+  LFGY    R
Sbjct: 467 FPNKLFFILSFIFCLFF--LFSLVLFGYDPKRR 497


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 410 IHAIFTFHKYQITIIVFTHESRQSWYRQTVYGG 508
           + A+   H Y I +IV  HE R S  R+ VYGG
Sbjct: 906 LSALQRAHSYPIHLIV--HEHRYSDLRKFVYGG 936


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 132 LLTLALSKCSAL*NLPMEHNYDLR 61
           LL  AL K S + N+P EH YDL+
Sbjct: 378 LLIRALCKLS-IKNIPYEHEYDLK 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,019
Number of Sequences: 5004
Number of extensions: 56250
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)