Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D02
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   7.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   7.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.7  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 424 YFSQISNYNN 453
           Y S ISNYNN
Sbjct: 89  YISNISNYNN 98


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 424 YFSQISNYNN 453
           Y S ISNYNN
Sbjct: 89  YISNISNYNN 98


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 424 YFSQISNYNN 453
           Y S ISNYNN
Sbjct: 327 YISNISNYNN 336


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = -2

Query: 694 VIYMAVNVLIIIGALLTY 641
           + ++ + ++I++GAL+TY
Sbjct: 13  LFFIQIVLIIVMGALMTY 30


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 639  EYVNKAPIIINT 674
            EY++KA +I+NT
Sbjct: 1390 EYLDKADVIVNT 1401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,444
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)