Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_D01
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 49 7e-07
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 31 0.12
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 29 0.64
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.64
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.5
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 27 2.6
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.6
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 27 3.4
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 27 3.4
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.0
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 26 6.0
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 25 7.9
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 48.8 bits (111), Expect = 7e-07
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = -2
Query: 504 LGAVDMTTPKKTV------TCVETVERHVAF-GFKARLVRTLANLCWKNQENKKQMRDLD 346
L +D PKKT+ + +E E + A G K VR +A +C K +R +
Sbjct: 292 LAVLDKRIPKKTLVEKTYASSMELQELYNAVVGVKRECVRFIAFICSKFSTAPDLVRHFN 351
Query: 345 VIPVLLDCCNIDARNPLIMQWVIFAIRTLCENCPENQEVIAKTTLQGPVDNEVLQEMGLT 166
+ +++ N D NP I + + R L +N ENQ++I T ++ L+E G T
Sbjct: 352 GVALIISQANYDDWNPYIREISVLCTRLLLQNNIENQKIIGGLTPITTTHSDALEEAGFT 411
Query: 165 LYTDSQNNSI 136
Y + + +
Sbjct: 412 SYINDKGKVV 421
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 645 ISSEKTRG-ESNAEKKSEPVKEVKISEENVATKVPSVKIDSPETQKTRLGAVDMTTPKKT 469
+ KT G ES+ +KS+ KE K ++ + K +K+D TQK + D + K +
Sbjct: 128 VKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSS 187
Query: 468 VTCVETV 448
+ ++ V
Sbjct: 188 KSGLKKV 194
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 29.1 bits (62), Expect = 0.64
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = -2
Query: 687 TDFDLS-EQLQKILGISSEKTRGESNAEKKSEPVKEVK----ISEENVATK--VPSVKID 529
TD D S + IS T G+ N+E EPV EV + E+V + PS +D
Sbjct: 118 TDEDASVNEFSVAADISDVNTLGKDNSESTEEPVNEVNETATLGNEDVGERSGFPSEGLD 177
Query: 528 S-PETQK 511
+ PE+Q+
Sbjct: 178 NEPESQR 184
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = -2
Query: 678 DLSEQLQKILGISSEKTRGESNAEKKSEPVKEVKISEENVATKVPSVKIDSPETQKTRLG 499
+ + +L+ I I + T + + + P +E+K S +V SV ++PE ++T++
Sbjct: 781 EANHELENIEKIEEKLTEVDKVSLSDAFPDQEIKNSRTSVQNGTRSVSKNTPE-KETKVD 839
Query: 498 AVDMTTPKKTVTCVETVERHVAF 430
+D + K T + E AF
Sbjct: 840 KIDNVSKKDVETSPGSCETSSAF 862
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 242 SGQFSHNVRMANMTHCIIRGLRASILQQSNSTGITSKSRI 361
SGQF VR HC + GL A ++ S G++ ++
Sbjct: 871 SGQFRPLVRKEIEEHCSLLGLDAELVSHSRIKGLSGGQKV 910
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 551 LVATFSSEIFTSLTGSLFFSAFDSPLVFSDEIPNI 655
LV T+SS+ T LTG FF D F E+P I
Sbjct: 30 LVGTWSSKSETVLTGPDFFDPLDEDF-FEPELPGI 63
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = -2
Query: 612 AEKKSEPVKEVKISEENVATKVPSVKIDSPETQKTRLGAVDMTTPKKTVTCVETVERHVA 433
AE+ SEP V ++ T V V ++ T VD++ P + E VER
Sbjct: 614 AEESSEPTSSVDVAP----TPVEDVNVNLESISNTNESVVDLSDPLVSKNGFEDVERSSV 669
Query: 432 FGFKARLVRTLANL 391
+ ++ T +++
Sbjct: 670 ADLEEDVLETRSSI 683
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 636 EKTRGESNAEKKSEPVKEVKISEENVATKVPSVKID 529
E R NA++ E VKE SE ++ + P+++ID
Sbjct: 430 EAFRCAINADEMEEAVKEKPDSEGDIISNAPALRID 465
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 179 SWSTSLSTGPWSVVFAITS*FSGQFSHNVRMANMTHCIIRGLRASILQQSNST 337
+++T+++ P + + IT S ++R N HC+ G++AS + QSN T
Sbjct: 382 TYNTNINNTPQTAISGITQ----DTSPSIR-TNCHHCLDDGMQASGIVQSNLT 429
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 621 ESNAEKKSE-PVKEVKISEENVATKVPSVKIDSPET 517
E AE +E P K +EEN AT P+V SPE+
Sbjct: 442 EEEAEHVAEHPDLAKKQTEENKATSKPAVSAKSPES 477
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 408 RTLANLCWKNQENKKQMRDLDVIPVLLDCCNID 310
R LAN C N EN+ +L I VL C+ D
Sbjct: 53 RFLANSCSDNNENRAAFFNLGGIDVLKPYCSKD 85
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 672 SEQLQKILGISSEKTRGESNAEKKSEPVKEVKIS 571
+ +LQK L S+EK +SN E K+ ++EV +S
Sbjct: 15 ASRLQKYLLESAEKHAYDSNEESKTHLLQEVFLS 48
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 648 GISSEK-TRGESNAEKKSEPVKEVKISEENVATKVPSVKIDSPETQKTRLGAVD--MTTP 478
GI S+ +RG+S +KS KE K S + ++K P + S + + +GA + +T P
Sbjct: 3 GIKSKMLSRGKSQDTQKSSKKKESKKSNSHDSSKAPK-ESPSTDPNGSVIGAQNDFLTVP 61
Query: 477 K 475
K
Sbjct: 62 K 62
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 451 RLHASYRLLRCGHVDCAKPCLLCFRR-INFHGRYFSRNIL 567
R+ S+ RCGH+D A C + +N +GR R ++
Sbjct: 81 RIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVV 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,010
Number of Sequences: 5004
Number of extensions: 59303
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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