Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_C24
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 3.6
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 29 3.6
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 29 3.6
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654 29 4.8
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 29 4.8
06_01_0032 + 343157-343507 28 6.4
05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484... 28 6.4
04_04_0718 + 27536657-27537688 28 6.4
07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823 28 8.4
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 523 SSDWL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 621
S+ WL H AP+N F+P + +PT FN+ + N
Sbjct: 392 SAVWLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 450 DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRXGIWSENLPPI 286
D+ LV+ G AK E N ++ Q+ L +A+ Q K + IW+ PP+
Sbjct: 321 DLALDLVQNGLAKYV---EWSANVLDPQLKTKLRNADLQVKKEQLRIWTGFKPPV 372
>02_05_1142 - 34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 223 SQEVTATVKIYHQKCFNRNKEFNINSIQV 137
S AT ++ HQ FN+ KEF N I V
Sbjct: 1027 SDNSVATRRLLHQAIFNKRKEFQWNKITV 1055
>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
Length = 381
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 663 IYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 526
+ LPL KP P +L +E G +NW G T + IG
Sbjct: 234 VALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 465 DVQTL-DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRXGIWSENLPP 289
D TL D+ +LVE G AK E N ++ L +AE QAK + IW+ PP
Sbjct: 313 DGDTLKDLALELVENGLAKYV---EWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPP 369
Query: 288 I 286
+
Sbjct: 370 V 370
>06_01_0032 + 343157-343507
Length = 116
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 116 VCTCLGFDLNGINIKFFVPIKALLVVNFNSC 208
VC CL + N + + VP+ L++N+ C
Sbjct: 77 VCVCLAINANLLGLNLDVPVDLSLLLNYCGC 107
>05_07_0231 -
28547468-28547636,28547767-28547839,28548382-28548463,
28548880-28548970,28549042-28549118,28549493-28549534,
28550101-28550108,28550404-28550534,28551358-28551385,
28551580-28551689,28551843-28551988,28552670-28552711,
28552824-28552832,28552888-28553032,28553596-28553687
Length = 414
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 549 QVTLKPIGRDXDDLVSTVLLHLPQP 475
+V LKP+ DL++TVLL LP P
Sbjct: 63 RVMLKPLEDPHVDLIATVLLQLPLP 87
>04_04_0718 + 27536657-27537688
Length = 343
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 417 AKASFPKELKKNTIESQIAPALLSAEAQAKSLRXGIWSENLPPIPAY 277
A + P+ + + S APA SAEA A R + SE LP I +
Sbjct: 33 AASPAPRRCLRLAVTSAAAPAASSAEAAAALSRVDVLSEALPFIQRF 79
>07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823
Length = 224
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 251 CEPFLQ*TIYAGIGGRFSDQMPXLRLFA 334
C PF++ AG+G + D +P RL A
Sbjct: 32 CVPFMEKLFAAGLGSKIMDALPSPRLMA 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,556
Number of Sequences: 37544
Number of extensions: 342145
Number of successful extensions: 849
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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