Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C24
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.3  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   7.6  

>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 14  NITSFEEKPNNYNCNNSFGSFLN*TLYECFSFHDVCTCLGFDLNGINIKFFVPIKALLVV 193
           N T  + +   Y  N  F SF++ T + C +F+      G D +G   +  VP   +  V
Sbjct: 477 NFTMLQAQSLTYRDNCMF-SFIS-TPFSCPNFYYQMLITGIDDSGYLYQRIVPAACIGGV 534

Query: 194 NFNSCSN 214
           N NSC+N
Sbjct: 535 NENSCAN 541


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 453 LDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRXG 313
           + IGKK  E    K    KELKKN  +   A  +    A+AK  + G
Sbjct: 443 VSIGKKFDEAQINKLQTEKELKKNAQKQANAAKMREKRAKAKEEQEG 489


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 453 LDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRXG 313
           + IGKK  E    K    KELKKN  +   A  +    A+AK  + G
Sbjct: 443 VSIGKKFDEAQINKLQTEKELKKNAQKQANAAKMREKRAKAKEEQEG 489


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 477 PKSKDVQTLDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRXGIWS 304
           P     + +++ + LVE G A   F  E       S    ALLSAE +AK  +  IW+
Sbjct: 616 PDGNTSRAINLSEALVENGLASLHFTAE------RSGHYNALLSAENKAKKAKKNIWA 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,695
Number of Sequences: 27780
Number of extensions: 321234
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)