Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_C22
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 27 2.3
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 27 4.1
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 27 4.1
04_04_1691 - 35393728-35394585 26 7.1
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 26 7.1
02_01_0130 - 938530-939990 26 7.1
09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751 25 9.4
09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458 25 9.4
06_03_0860 + 25484826-25485758,25486155-25486406 25 9.4
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 25 9.4
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505... 25 9.4
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 25 9.4
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 143 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKR 235
G A +C R+RHH R+ R +HC+++R
Sbjct: 85 GSARNCR-RRRHHPRIRLRPPPTRRHCERER 114
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 192 PTRMWCLCRTLQLP 151
P RMWC CR + LP
Sbjct: 277 PGRMWCHCRMVYLP 290
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 132 CHPYLYLPSTALHSPASTHKSHMQM 58
C PYL + STAL++ A++ H M
Sbjct: 438 CRPYLSIDSTALNASATSINGHNWM 462
>04_04_1691 - 35393728-35394585
Length = 285
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 180 WCLCRTLQLPATPFXTCHPYLYLPSTALHSP 88
W +CR P T +L+ P+ LH P
Sbjct: 155 WVVCRAFHKPTTTTLQHQLHLHRPAPLLHHP 185
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 221 NAGSLRLRGGRPVCGASAVRCNC 153
N SL+ GRP+C ++ C+C
Sbjct: 202 NNSSLKNADGRPICPSTGKPCSC 224
>02_01_0130 - 938530-939990
Length = 486
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 201 ARRPTRMWCLCRTLQLPATPFXTC 130
A TR W LCR LP+T +C
Sbjct: 17 ASAKTRAWWLCRDGNLPSTSRISC 40
>09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751
Length = 575
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 194 RRAGEESQH-CDQKRLKHFDNLSLAKFDCTRFALKSAG 304
+R G H D KR+K NL L +FD F AG
Sbjct: 248 KRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFNFPHAG 285
>09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458
Length = 470
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 179 HIRVGRRAGEESQH-CDQKRLKHFDNLSLAKFDCTRFALKSAG 304
+I V + G + H D K +KH +L + +FD F L AG
Sbjct: 130 NIMVLKLMGATTLHGVDAKTMKHHTDLKMRRFDRIVFNLPHAG 172
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 261 SDKLSKCLRRF*SQCWLSSPARRP 190
S S L +CW ++PARRP
Sbjct: 318 STSCSPVLNNLIKRCWSANPARRP 341
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 207 SPARRPTRMWCLCRTLQLPATPFXTCHP 124
+P R P R WC T + P +P HP
Sbjct: 400 APPRHPPRPWCRPHTPR-PRSPHSPTHP 426
>03_02_0021 -
5049705-5049713,5049744-5049770,5049877-5049940,
5050019-5050806,5050888-5051046,5051778-5052419
Length = 562
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 188 PVCGASA-VRCNCRLPPFXRVILICTYRLQLCIHRLLPTN 72
P C AS RC PP R + C+ +L + R L T+
Sbjct: 8 PYCRASGPARCVTTQPPLSRAVSECSSCARLVLERHLHTH 47
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 224 RNAGSLRLRGGRPVCG-ASAVRCNCRLPPFXRVILICTYRLQLCIHRLLPTNR 69
R A + + GR + G A + + + PP R I+ C Y C+ R T+R
Sbjct: 70 RRALTHNIASGRTLFGRAFSQKTHPHRPPLLRRIIFCRYLPSRCLLRSSRTSR 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,119,975
Number of Sequences: 37544
Number of extensions: 149340
Number of successful extensions: 437
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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