Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C21
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    89   5e-19
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    75   9e-15
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   5.8  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -2

Query: 561 QGMLPLTFAXAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTD-RIKLNHSLND 385
           QG+LPLTFA  A YDKI P D + + GL + APGKP+   +   DGS +   KLNH+ N 
Sbjct: 697 QGLLPLTFADPAAYDKISPFDTVDIDGLTTFAPGKPLTLVVHPADGSAEWSTKLNHTFNK 756

Query: 384 QQINWFKAGSALNRMKEIASGK 319
            QI WFKAGSALN M  +   K
Sbjct: 757 DQIEWFKAGSALNHMANMHKQK 778


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 74.5 bits (175), Expect = 9e-15
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
 Frame = -2

Query: 561 QGMLPLTFAXAADYDKIKPDDKISLLGLNSLAPG---KPVDCEIKHKDGSTDRIKLNHSL 391
           QG+LPLTF   ADY+KI  +DK+S  G+  L  G   +P+   +  KDGS   I   H++
Sbjct: 706 QGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLEGVLDQPITLVVTKKDGSVVEIPCKHTM 765

Query: 390 NDQQINWFKAGSALNRMKEIA 328
           +  QI +FKAGSALN ++E A
Sbjct: 766 SKDQIEFFKAGSALNLIREKA 786


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 276 SNASVSFNTNLFSFTFRKRFPSFC 347
           SN   +FN+ LF F F    PS C
Sbjct: 197 SNFPSNFNSELFPFYFHDVVPSIC 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,536
Number of Sequences: 5004
Number of extensions: 30907
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)