Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C19
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    77   3e-15
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    31   0.19 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    30   0.33 
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.3  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   1.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.3  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   2.3  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    27   3.1  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   5.4  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   7.2  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   9.5  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
 Frame = -3

Query: 435 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 268
           L N+  +  S+   N M     E    D+++  +  E R A   RL YQSRKRG+LE DL
Sbjct: 7   LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66

Query: 267 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLXXH 91
           LLS FAK  ++ +       YD+L++ P  DWDI YW   ++  P+++  +++   L  +
Sbjct: 67  LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124

Query: 90  AKNEDKIALRQPEL 49
            +++    LR PEL
Sbjct: 125 CRSQRNHTLRMPEL 138


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 426 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 250
           +Q + F  +  NN+DTT ++  L D+ K+  +        H+ + + G ++  L+ + F 
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712

Query: 249 K 247
           K
Sbjct: 713 K 713


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 31/139 (22%), Positives = 53/139 (38%)
 Frame = -3

Query: 465 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 286
           TR   L+   LK+++ +    +    MD    ++ +   +    LEKRKA LH Q  K  
Sbjct: 7   TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63

Query: 285 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMN 106
                LL   +    L  +   Q   Y  L NS  +D+        +   P +     + 
Sbjct: 64  QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLHTNQLYEPVKRSQNFLT 120

Query: 105 LLXXHAKNEDKIALRQPEL 49
            +  H ++   +   QP+L
Sbjct: 121 SISEHYRDAKLMHQVQPQL 139


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -3

Query: 159 WIVEKKPTPKEFDNEIMNLLXXHAKNEDKIALRQPELH*NEN 34
           WI  K P  KE  NE    L    + ED     +PELH N N
Sbjct: 33  WISMKSPLEKEIANE-YEALKVTERKEDTQDYNEPELH-NSN 72


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = -3

Query: 540 ETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 385
           ET+ +K++ LSK+ K+++++IKM      NL +    N+ K   S  T +++
Sbjct: 33  ETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH---PNIVKYRGSYQTNDSL 81


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 528 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIP 361
           L+ L + ++D N +  +K    M+H R L +S NA+  ++   F    T  MD      P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 546 DFETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVA--FSSNTTNNMDTTY 373
           DF +++ + ++ S++   N+ L K  +     +  N +KNV   A    S    N+D  Y
Sbjct: 320 DFSSVIFQPMAKSEVKIKNILLSKYAYLAQNPVGNNKVKNVDSSAGLDESMADLNLDEEY 379

Query: 372 MEIPLYDV 349
           +   L+ V
Sbjct: 380 LPFVLFTV 387


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 462 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 289
           R+L  +YN    +     SS++T N +     ++P    E+++   KRK  +   +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = -3

Query: 423 QKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 253
           +KV FSS+   N D+TY         K Q L K  A L  Q  K+   +L  DL  L   
Sbjct: 42  EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93

Query: 252 AKKYLNGFNE--KQTMMYDRLINSPSN 178
           +  Y  G ++  K    Y   +N   N
Sbjct: 94  SDCYAKGMDDIMKHVATYTATMNERMN 120


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 6  RNKFILLTLHFRFNVARVVGVQFY 77
          R+KF+L++L    N+  ++G+Q Y
Sbjct: 16 RSKFVLISLILLLNLGLLLGIQIY 39


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 525 KRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYME 367
           K L+L +I++  M++IK   +    L+Y+  K V+K              Y+E
Sbjct: 460 KGLTLEEINELYMSVIKPWESGNFKLNYSEQKKVEKEKSRKGGARGESVEYVE 512


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 2/131 (1%)
 Frame = -3

Query: 549 FDFETILLK-RLSLSKIDKNNMNLIKML-HTRTLNLSYNALKNVQKVAFSSNTTNNMDTT 376
           ++F    L+ +  +SKI +   +LI+   H+  + + Y   +       +  T  N  T 
Sbjct: 24  YEFNKFFLRYKTEISKIQRRTSSLIQYEEHSSAIFIYYETPQMFDLATKALQTLYNSHTR 83

Query: 375 YMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRL 196
             E       K      R  R  + S++  ++      +   KKYL   +   +   + L
Sbjct: 84  EGET------KAASKWYRNPRKDFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGL 137

Query: 195 INSPSNDWDIF 163
              PS+D D++
Sbjct: 138 FTLPSDDLDVY 148


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 357 YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKY 241
           Y+V KQQ   + +    + ++KRG+  N+  L   AKKY
Sbjct: 783 YNVAKQQRAYEEEINRIWNAQKRGLSINN--LEELAKKY 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,283
Number of Sequences: 5004
Number of extensions: 55017
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)