Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_C18
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 27 0.54
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 26 1.3
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 1.7
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 3.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 3.8
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 5.1
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 24 5.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 24 5.1
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 5.1
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 6.7
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 24 6.7
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 27.5 bits (58), Expect = 0.54
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 226 VDGTYFFTFDILIVIDTCFPYEQTAGH 306
+DG + FD I+ID F YE GH
Sbjct: 422 LDGKFKDIFDKCIIIDCRFEYEYLGGH 448
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 26.2 bits (55), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 214 SNSGVDGTYFFTFDILIVIDTCFPYEQTAGH 306
SN+ T F T ++ ++D C +E T GH
Sbjct: 183 SNAKFSSTIFSTPELTKLVDFCKNHESTTGH 213
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 226 RLNSKRPLEDTKSSLPIWTILIQSPYVYSILYR 128
RLNS RP+E T+ +L + ++ IQ V +L++
Sbjct: 467 RLNSIRPVEFTEPALGVASLKIQFDAVEILLWK 499
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 3.8
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +2
Query: 119 AYSAIEDRIHVW 154
AYSA ++R+H+W
Sbjct: 128 AYSAAQERLHIW 139
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 250 R*KSTCRQRLNSKRPLEDTKSSL 182
R KS RQ+++S PLED + +L
Sbjct: 176 RLKSKSRQKISSSDPLEDLRLTL 198
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 160 ESGSSRLATNSLYLPMVFSNSGVDGTYFFTFDILIVIDTC 279
+S + + ++Y P+VF FTFD+ V +C
Sbjct: 241 DSANPSSNSGNVYSPVVFQKQNNHTNTIFTFDVPQVSGSC 280
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -1
Query: 233 PSTPEFEKTIGRYKEFVANLDDPDSEPIRVFDPLSQSMLEELA 105
P TP+ I ++KE V D P + + + S E+++
Sbjct: 348 PFTPDLATPISKFKEAVKKNDWPQELKVGLIGSCTNSSYEDMS 390
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 24.2 bits (50), Expect = 5.1
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -1
Query: 245 KKYVPSTPEFEKTIGRYKEFVANLDDPDSEPIRVFDPLSQSMLEEL 108
+K V STP + +K + N+++ +EP + DP+ +++ E+
Sbjct: 307 EKEVESTPSI---LQNFKVSLVNVENVPNEPFKRQDPVIKAVTSEI 349
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 160 ESGSSRLATNSLYLPMVFSNSGVDGTYFFTFDILIVIDTC 279
+S + + ++Y P+VF FTFD+ V +C
Sbjct: 241 DSANPSSNSGNVYSPVVFQKQNNHTNTIFTFDVPQVSGSC 280
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 184 TNSLYLPMVFSNSGVDGTYFFTFDILIVIDTC 279
+ ++Y P+VF FTFD+ V +C
Sbjct: 329 SGNVYSPVVFQKQNNHTNTIFTFDVPQVSGSC 360
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 208 PLEDTKSSLPIWTILIQSPYVYSIL 134
PL+D +SS P+ T+L +S ++ IL
Sbjct: 182 PLKDFQSSPPLSTVLQKSHSLHDIL 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,118
Number of Sequences: 5004
Number of extensions: 21323
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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