Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C18
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925     28   1.5  
02_05_1070 + 33872845-33873726                                         27   3.5  
08_02_0547 - 18484761-18485951                                         26   6.1  
03_05_0680 + 26682010-26682030,26682675-26682869,26684203-266844...    26   8.0  

>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
          Length = 266

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 209 TIGRYKEFVANLDDPDSEPIRVFDPLSQSMLEELA 105
           T+G Y+ ++AN+   D E +RV D    + + E A
Sbjct: 74  TVGPYRGYIANIPGMDWESLRVHDADDAARVREFA 108


>02_05_1070 + 33872845-33873726
          Length = 293

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 164 DSEPIRVFDPLSQSMLEELALIRDV 90
           D EP+ + +  + ++ EE ALIRDV
Sbjct: 24  DEEPVEIREVWADNLEEEFALIRDV 48


>08_02_0547 - 18484761-18485951
          Length = 396

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 281 KHVSITIRMSKVKKYVPSTPEFEKTIG 201
           +H      MS V +Y P  PE EKT+G
Sbjct: 201 EHAGCMDGMSMVAQYYPPCPEPEKTMG 227


>03_05_0680 +
           26682010-26682030,26682675-26682869,26684203-26684428,
           26684602-26685221
          Length = 353

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 137 DRIHVWALNQDRPDWQRTLCIFQW 208
           D  + W +N +RP  QR   +F W
Sbjct: 308 DMFYAWCVNVERPLVQRAKEVFSW 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,355,411
Number of Sequences: 37544
Number of extensions: 128769
Number of successful extensions: 404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)