Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_C16
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.79
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 1.8
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0... 27 3.2
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 26 5.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.6
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 7.4
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 7.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 7.4
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.4
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.7
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 9.7
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.7
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 25 9.7
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.1 bits (62), Expect = 0.79
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 650 CTCISNFVKIKESKCDQYSFKPLRSETLMK 739
C ++ + S+C +Y FKPL +E ++K
Sbjct: 160 CNYMTRIIDPLSSRCSKYRFKPLDNENMVK 189
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 603 VTAAQNTSLIRNEKITDFFNKMLPELQGQNEWKEWFTFPYIQKPE--ENPSF 454
V+ ++T ++ +F LP+++ EW +WF F + + E +NP F
Sbjct: 27 VSKKEDTEPEVRDEAKEFLLSQLPQVEVP-EWAQWFDFSKVHEIEKKQNPEF 77
>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
Q0080|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 48
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 531 LATFY*RNLLSFHFLLNWYSVQLSLSTVYI 620
L FY N+LSF FL+ ++V L +S+VY+
Sbjct: 4 LVPFYFINILSFGFLI--FTVLLYISSVYV 31
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 737 KCIICSIILSTLKP---LSLSAFKSXSNA 814
KC++C+IIL P LSL A K+ + A
Sbjct: 109 KCLVCNIILDIQDPLLSLSLEAMKNATKA 137
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.6
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = -1
Query: 741 HFINVSDLNGLKEYWSHLDSLIFTKLEIHV-QPAIRKLEYSLYKLYLVTAAQNTSLIRN- 568
H IN++D ++ + S + +E+ + Q A R +E L A ++ N
Sbjct: 218 HSINLNDAETMQRHLDMRFSQLNVAVELELWQEAFRSIEDIHSLLTFSKRAPAAVMLGNY 277
Query: 567 -EKITDFFNKMLPELQGQNEWKEWFTFPYIQKP 472
K+ F L W +FTF +QKP
Sbjct: 278 YRKLIKIFLVCDNYLLHAAAWNRYFTFTNVQKP 310
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 432 WQDSVLVSLHNLLATVFQCMPQPTLTSYESDAILV 328
W+D + V ++LL T+FQ P P + + AI +
Sbjct: 41 WKDRMSVKTNSLLQTLFQ-TPLPNANIWSNQAIRI 74
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 7.4
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Frame = -1
Query: 489 PYIQKPEENPSFSLYFTRAWQDSVLVSLHNLLATVFQCMPQP--TLTSYESDAILVKKLQ 316
PY+ K + N S+ + + +++ + +LLA +P+P T T E D + K+
Sbjct: 248 PYVPKVDMNLDHSVVDSVRLRKALMEVITSLLAAYGSKVPKPSETHTDPEKDKKIFSKIC 307
Query: 315 DKLAAVSGKTLQQQPMDKTSP-TTHQSRLSQYAERLSGTAPLVDDFCAVPSEQLDSTREA 139
+ TL D P + S S + S + PL + P+ +LDS +
Sbjct: 308 KTEELLELPTLSAVTSDSAQPHSLPASMPSSQPQSRSESLPLTHP-NSEPNPKLDSQPNS 366
Query: 138 RGLR 127
+R
Sbjct: 367 SPVR 370
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 440 VKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFCAAVTKYS-- 613
VK + E F++GF + G ++HS + N +L S +F ++K + V ++
Sbjct: 517 VKIEYTEDFATGFAISGEISHSIN-----NLEFVLYSLSSLFLMMLKWFRLSHVLRFERL 571
Query: 614 LYKLYSN 634
+ LY N
Sbjct: 572 AFLLYEN 578
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = -1
Query: 732 NVSDLNGLKEYWSHLDSLIFTKLEIHVQPAIRKLEYSLYKLYLVT---AAQNTSLIRNEK 562
N S + +K S++ S I H Q + + ++ K +L+ + + L N+
Sbjct: 250 NTSSIFQVKNEMSNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPFEFSLEGGFLNYNKT 309
Query: 561 ITDFFNKMLPELQGQNEWKEWFTFPYIQK 475
++ + K+L E + + K WFTF + K
Sbjct: 310 FSNLY-KVLSETEKTRDSKVWFTFRLVLK 337
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 9.7
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Frame = -1
Query: 540 MLPELQGQNEWKEW-----FTFPYIQKPEENP-SFSLYFTR---AWQDSVLVSLHNLLAT 388
+L +L+ Q W + PY K E+ S+ L R A S + + + L
Sbjct: 50 LLKDLEFQRAWNDLEYISSLPHPYNSKQNEHVRSYILKSMRELEATNQSYITVIDDTLTN 109
Query: 387 V-FQCMPQPTLTSYESDAILVK 325
+ F+ TLT +E D ILVK
Sbjct: 110 ITFESTDNDTLTYFEGDNILVK 131
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 200 HPSWTTSARYRPNSWTAREKPGAYGAYYEWE 108
H WT + R P + +R +PG G E E
Sbjct: 375 HTVWTATPRLDPKTGLSRYRPGGLGIPPETE 405
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 423 SVLVSLHNLLATVFQCMPQPTLTSYESDAILVKKLQDKLAAV 298
S L +LH + + + TL+S + IL+KKL + + A+
Sbjct: 305 SSLYTLHQVYTATSESINIKTLSSTTPEYILLKKLSETIVAL 346
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 285 LQQQPMDKTSPTTHQSRLSQYAERLSGTAPLVDDFCAVPSEQLDSTREA 139
+Q P+ + Q LS+YAE T P+V D A P+++ + R A
Sbjct: 14 IQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLA 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,749
Number of Sequences: 5004
Number of extensions: 72286
Number of successful extensions: 248
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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