Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C16
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387...    29   3.3  
08_01_0014 + 102100-102455,102543-102900                               29   4.4  
01_06_1625 + 38729803-38731115,38731202-38731391,38731472-387315...    29   4.4  
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913...    28   7.7  
05_05_0363 - 24424224-24424538,24424710-24425101,24425192-244253...    28   7.7  
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    28   7.7  
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    28   7.7  

>12_01_0489 +
           3872495-3872538,3872663-3872741,3872835-3872914,
           3873888-3874007,3874090-3874159,3874238-3874311,
           3874393-3874513,3874600-3874662,3874748-3874807,
           3875156-3875281,3875358-3875441,3875912-3876010
          Length = 339

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 650 CTCISNFVKIKESKCDQYSFKPLRSETLMKCI--ICSIILSTLKPLSLSAFKSXSN 811
           C  IS  ++   S+C ++ FKPL  E +   I  IC+    +L   +L+   + SN
Sbjct: 151 CNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISN 206


>08_01_0014 + 102100-102455,102543-102900
          Length = 237

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 413 TSTLSCHALVKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFC 592
           T+  S  A + Y  +EG     W+   +   FH FC   SG ++     +F  ++ +V  
Sbjct: 167 TAAASAAAAMVYVAHEGNLRANWV--PICLQFHGFCQRTSGAVIASFLAVFVLMVLIVMA 224

Query: 593 A 595
           A
Sbjct: 225 A 225


>01_06_1625 +
           38729803-38731115,38731202-38731391,38731472-38731504,
           38731582-38732199,38732304-38733011
          Length = 953

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -1

Query: 198 PLVDDFCAVPSEQLDSTREARGLRSLLRMGNTPVMGRKAARSQSQELIDCKNFAGLAICI 19
           PL+     V S+QL    EA     L    +  +MGR    +  Q+L   KNFA    C 
Sbjct: 721 PLISPSVPVASDQL----EANNFLYLHTFNSYQLMGRMGTPAHPQQLQLIKNFASSKACT 776

Query: 18  P 16
           P
Sbjct: 777 P 777


>06_01_1109 +
           9127761-9127976,9128084-9128290,9129539-9129753,
           9131665-9131904,9133372-9133570,9134666-9134992,
           9135977-9136070,9136307-9136320
          Length = 503

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 8   IQTGMQIASPAKFLQSINSWLCDLA 82
           +  G QI  PA+F  S+N++L DL+
Sbjct: 315 LNNGQQIVLPAEFKSSLNTYLSDLS 339


>05_05_0363 -
           24424224-24424538,24424710-24425101,24425192-24425381,
           24425549-24425730,24427328-24427391
          Length = 380

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 213 LSGTAPLVDDFCAVPSEQLDSTREARGLRSLLRMGNTPVMGR 88
           +SG +  V DF      + DSTR       +LR+GN  +  R
Sbjct: 3   ISGRSAFVSDFLPAELYENDSTRNRAAAGEILRIGNHNIPSR 44


>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
            21742227-21742292,21743213-21743371,21743573-21743609,
            21743757-21744194,21744735-21744817,21744920-21744956,
            21745146-21745214,21745316-21745407,21745481-21745565,
            21745903-21745982,21746327-21746724,21746813-21747717,
            21747825-21747915,21748617-21750680,21750681-21750749,
            21750850-21751273,21751644-21751763
          Length = 1832

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 309  LAAVSGKTLQQQPMDKTSPTTHQSRLSQYAERLSGTAPLVDDFCAVPSEQLDSTREA 139
            L A+S +     P+ K     H+ R   Y   L  + PL+   C   +++L  TREA
Sbjct: 1625 LVAISNEAASI-PVPKLK-NVHRLRTEHYVYELPDSHPLMQQSCGYCADELKDTREA 1679


>01_07_0298 -
           42586007-42589742,42590167-42590280,42590295-42590437,
           42591174-42591347
          Length = 1388

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 489 PYIQKPEENPSFSLYFTRAWQDSVLVSLHNL 397
           P   KP    S  +YF+  WQ++ L  L NL
Sbjct: 780 PVSTKPVPESSCRIYFSYGWQETPLYKLQNL 810


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,653,787
Number of Sequences: 37544
Number of extensions: 440073
Number of successful extensions: 1216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)