Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C15
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784...    33   0.11 
10_02_0166 - 6065088-6065093,6066671-6068544,6068643-6069548,606...    27   7.1  
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558...    27   7.1  

>05_05_0055 +
           21977546-21978061,21978144-21978162,21978168-21978486,
           21978779-21978799,21980780-21980857,21981116-21981359
          Length = 398

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 307 AHHQQHRKGNKNHRF--EHFVIYTNHSTKACLINRRDHCRDCL 429
           AH   HRKG   +R   +  +  TNH+    L +R + CRD L
Sbjct: 333 AHDSFHRKGQAKYRAWTDEHIAPTNHTNSLTLSHRSEACRDAL 375


>10_02_0166 -
           6065088-6065093,6066671-6068544,6068643-6069548,
           6069623-6069676,6069751-6069808
          Length = 965

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 162 NGFFNNNT-GMSRHKRRDKCRLGVHCRTRHMPLAHSIHS 275
           NG F+  T G+S  +R    R GV+    H  + H+IHS
Sbjct: 135 NGHFSFTTLGVSLDERYTNMRSGVYTFRAHGQIYHNIHS 173


>10_02_0129 +
           5584585-5584732,5586567-5586968,5587038-5587106,
           5587181-5587234,5587309-5588214,5588313-5590283,
           5590833-5591235,5591845-5591857
          Length = 1321

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 162 NGFFNNNT-GMSRHKRRDKCRLGVHCRTRHMPLAHSIHS 275
           NG F+  T G+S  +R    R GV+    H  + H+IHS
Sbjct: 322 NGHFSFTTLGVSLDERYTNMRSGVYTFRAHGQIYHNIHS 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,346,241
Number of Sequences: 37544
Number of extensions: 156961
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)