Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C13
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...   180   2e-46
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    39   0.001
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    31   0.14 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    28   1.3  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.9  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score =  180 bits (439), Expect = 2e-46
 Identities = 86/170 (50%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
 Frame = -3

Query: 768  DRHRXKLIAGKIIPAIATTTSVVAGLVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSE 589
            DR + K +AGKI+PA+ T+T+VV+GLVCLEL KL  G  K+E +KNGF NLA+  F FS+
Sbjct: 840  DRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSD 899

Query: 588  PIA-PSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMP 412
            PIA P      +    +WDR+ +  + TLQ+ +D+F+ E  LE+TMLS GV +LY+ F P
Sbjct: 900  PIASPKMKVNGKEIDKIWDRYNLP-DCTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQP 958

Query: 411  KAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 262
              K  ERL L +SE+V +++KKKLEP    LV E+CC+D +G DVEVP++
Sbjct: 959  PKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFI 1008


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 753 KLIAGKIIPAIATTTSVVAGLVCLELYKLAQG 658
           K +AG IIPAIATT +V+AGL   +  K+ QG
Sbjct: 369 KQMAGNIIPAIATTNAVIAGLCITQAIKVLQG 400



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 666 PVCKVRGRPSQPLRMLWW 719
           PVC +R  PSQP+  + W
Sbjct: 179 PVCTIRSTPSQPIHCVVW 196


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 254 VYFTYGTSTSFPSSSLQHNSKTNAFTCGSNFFLDTFVTTSDIGRFNRSSRLALGMKN 424
           +YFT GT+  FP   L+HN  +  F C S   L   +T  D+  F   S  +  +KN
Sbjct: 23  LYFTIGTN--FPHDELRHNLLSTLF-CSSMLHLSKGLTVKDVRIFFHDSIGSTLLKN 76


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 501 QFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLER 391
           +FL   K   KLE    S+ V ML +  + KAKRLE+
Sbjct: 231 EFLRLSKRMKKLEELWTSENVSMLDALLLNKAKRLEQ 267


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 353 DTFVTTSDIGRFNRSSRLALGMKNE*SMH 439
           +TFVTT DI + +R+S L+L   +   +H
Sbjct: 437 ETFVTTDDITQLSRTSTLSLSTASPRLVH 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,558
Number of Sequences: 5004
Number of extensions: 64896
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)