Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_C13
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 151 8e-37
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 149 2e-36
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 142 4e-34
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 140 8e-34
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 36 0.036
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938... 31 1.3
12_01_0322 - 2451062-2451601,2451691-2451792,2452237-2452329,245... 28 9.5
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 151 bits (365), Expect = 8e-37
Identities = 73/169 (43%), Positives = 109/169 (64%)
Frame = -3
Query: 768 DRHRXKLIAGKIIPAIATTTSVVAGLVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSE 589
D+ + K IAG+IIPAIAT+T++ GLVCLELYK+ G +K+E ++N F NLA+P F +E
Sbjct: 884 DKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLGGGHKVEDYRNTFANLAIPLFSMAE 943
Query: 588 PIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPK 409
P+ P T + + WT+WDR+ + G ITL++ LD K E L +S G +LY+ P+
Sbjct: 944 PVPPKTIKHQDMAWTVWDRWTITGNITLRELLDWLK-EKGLNAYSISCGTSLLYNSMFPR 1002
Query: 408 AKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 262
K ERL+ + +V +V+K ++ P+ L + C DDD NDV++P V
Sbjct: 1003 HK--ERLDKKVVDVAREVAKVEVPPYRRHLDVVVACEDDDDNDVDIPLV 1049
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 149 bits (362), Expect = 2e-36
Identities = 72/167 (43%), Positives = 108/167 (64%)
Frame = -3
Query: 768 DRHRXKLIAGKIIPAIATTTSVVAGLVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSE 589
D+ + K IAG+IIPAIAT+T++ GLVCLELYK+ G +K+E ++N F NLA+P F +E
Sbjct: 1008 DKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLGGGHKVEDYRNTFANLAIPLFSMAE 1067
Query: 588 PIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPK 409
P+ P T + + WT+WDR+ + G ITL++ LD K E L +S G +LY+ P+
Sbjct: 1068 PVPPKTIKHQDMAWTVWDRWTITGNITLRELLDWLK-EKGLNAYSISCGTSLLYNSMFPR 1126
Query: 408 AKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVP 268
K ERL+ + +V +V+K ++ P+ L + C DDD NDV++P
Sbjct: 1127 HK--ERLDKKVVDVAREVAKVEVPPYRRHLDVVVACEDDDDNDVDIP 1171
>07_03_1774 + 29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 142 bits (343), Expect = 4e-34
Identities = 68/169 (40%), Positives = 104/169 (61%)
Frame = -3
Query: 768 DRHRXKLIAGKIIPAIATTTSVVAGLVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSE 589
D+ + K IAG+IIPAIAT+T++ GLVCLELYK+ G + +E ++N F NLALP F +E
Sbjct: 915 DKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVIAGEHPIEDYRNTFANLALPLFSMAE 974
Query: 588 PIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPK 409
P+ P + + WT+WDR+ +KG +T+ + L F ++ L +S G +LY+
Sbjct: 975 PVPPKVMKHQDMSWTVWDRWSIKGNLTVAELLQWF-SDKGLTAYSISCGTSLLYNNMF-- 1031
Query: 408 AKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 262
A+ ERLN + +V +V+K + + L C DDDGND+++P V
Sbjct: 1032 ARHKERLNKKVVDVAREVAKVDVPEYRKHLDLVAACEDDDGNDIDIPLV 1080
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 140 bits (340), Expect = 8e-34
Identities = 65/169 (38%), Positives = 107/169 (63%)
Frame = -3
Query: 768 DRHRXKLIAGKIIPAIATTTSVVAGLVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSE 589
D+ + K IAG+IIPAIAT+T++ GLVCLELYK+ G + +E ++N F NLA+P F +E
Sbjct: 1009 DKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLAGGHPVEDYRNSFANLAIPMFSMAE 1068
Query: 588 PIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPK 409
P+ P + + +WT+WDR+ ++G IT+ + L + ++ L +S G +LY+ P+
Sbjct: 1069 PLPPKVIKHQDMRWTIWDRWSIEGNITVAELL-KWLSDKGLSAYSVSCGTSLLYNTMFPR 1127
Query: 408 AKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 262
K +R+N + +V +V+K + + L + C DDDGNDV++P +
Sbjct: 1128 HK--DRVNKKLVDVAKEVAKVDVPAYRRHLDVVVACEDDDGNDVDIPLI 1174
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -3
Query: 753 KLIAGKIIPAIATTTSVVAGLVCLELYKLAQG 658
K +AG I+ A+ATT +++AGL+ +E K+ G
Sbjct: 354 KGVAGNIVHAVATTNAIIAGLIVIEAIKVLHG 385
>01_01_1178 +
9385261-9385374,9385457-9385620,9386251-9386453,
9387130-9387362,9387584-9387640,9388120-9388241,
9388366-9388425,9388426-9388543,9389005-9389286
Length = 450
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 747 IAGKIIPAIATTTSVVAGLVCLELYKLAQGFNK 649
+ IIPAIA+T ++V+ LE KL G +K
Sbjct: 259 VVKNIIPAIASTNAIVSAACALEALKLISGCSK 291
>12_01_0322 -
2451062-2451601,2451691-2451792,2452237-2452329,
2452443-2452589,2453063-2453150,2453338-2453426,
2453698-2453763,2453962-2454076,2454269-2454462
Length = 477
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 246 KAECILHTGPPHRSRHHHCSTIQKLMHSHA 335
K +CI + GP R + + T K++H H+
Sbjct: 175 KKQCIKYLGPQERELYEYIVTEGKIIHKHS 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,571,587
Number of Sequences: 37544
Number of extensions: 440984
Number of successful extensions: 1272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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