Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C09
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   1.1  
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   1.4  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   1.8  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   2.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   3.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   4.3  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    24   5.6  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    24   7.5  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    23   9.8  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    23   9.8  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    23   9.8  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   9.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   9.8  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    23   9.8  

>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 68  VLLVPVSLPWFRXWSS-CSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 244
           V L P+ +   R +     +I Q+YA+   + R  L   L  H   EGS     S++ GS
Sbjct: 62  VTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRYLEKHGKLEGS--MKESSINGS 119

Query: 245 VL 250
           +L
Sbjct: 120 LL 121


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = -1

Query: 109 PXPEPWEAYRN------KQYKFYSPIRDYSKEESP 23
           P  EPW  ++N      + +  YS ++D S  ESP
Sbjct: 91  PDQEPWNVFQNAKKRDGQYFAVYSKLKDDSSNESP 125


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 136 ILMYLGTRRPXPEPWEAYRNKQYKFYS---PIRDYSKEESPAPKDETV 2
           IL Y+      P+  E +RN   KFY     +R     +SP+  D+TV
Sbjct: 95  ILQYIRMELIPPDCLEVFRNSDVKFYDGCLTVRIIDHRQSPS-ADQTV 141


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 154 CVWLCV--ILMYLGTRRPXPEPWE 89
           C W  V  +L Y+   +P PEP+E
Sbjct: 440 CAWSLVDPLLKYMEEEKPVPEPYE 463


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +2

Query: 5   SFVFGGRRFLLRVVSDGRIELVLLVPVSLPWFRXWSSCSKIHQDYAKPDAEYRTQLHHIL 184
           SF   G  FLL +     I L LLV + L + R WS   K  +  A+P  E    +  ++
Sbjct: 145 SFSVKGGSFLLLLPLAYNITLFLLVIIPLFFPRAWSPTVKFSK-VARPSPEQTCSIFSLI 203


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 LSPHIHTEGSKPYASSNLRGS 244
           L+P IH EG + Y+SS  + S
Sbjct: 829 LAPSIHVEGLETYSSSERKDS 849


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 56  RIELVLLVPVSLPWF 100
           RI  VLL+ + LPWF
Sbjct: 2   RINFVLLITLILPWF 16


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -1

Query: 148 WLCVILMYLGTRRPXPEPWEAY 83
           W C+   Y     P PE W  Y
Sbjct: 367 WSCLDKFYTAFEMPFPENWSFY 388


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 172 PPHPIPTHTYRGIKALCFFKLERLSPC 252
           P H IP H    I+ +C   +   +PC
Sbjct: 428 PKHSIPLHFVNRIQRVCKHTIFASNPC 454


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 208 IKALCFFKLERLSPCILNYLIAL*IRKNCPQTEYCCRSIGR 330
           +KALCFF        + ++++ + I KN     Y  R  GR
Sbjct: 127 LKALCFFLWFMFGLYVASFIVQIFIAKN-DTPNYTFRGRGR 166


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 55  ENRTCTACSCKPPMVQGLVFLFQDTSGLRKARRR 156
           ++R CT     PP+   L + +   +G+ +  R+
Sbjct: 83  QSRKCTTFGLDPPISAHLFYTYNRDTGMNRVARQ 116


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 117  VPRYIRITQSQTQSIEHS 170
            VPRY  +  SQT+ I HS
Sbjct: 1115 VPRYALLKPSQTRGILHS 1132


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 163  NTAPPHPIPTHT 198
            +TAPP PIPT T
Sbjct: 1038 STAPPVPIPTST 1049


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 41  VVSDGRIELVLLVPVSLPWFRXWSSCSKIHQD 136
           +V DG +    L P+ L W   +   ++IHQ+
Sbjct: 736 LVKDGTLNFCFLKPLLLKWMNDYE--TRIHQN 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,651
Number of Sequences: 5004
Number of extensions: 29158
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)