Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C09
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   3.5  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   3.5  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   3.5  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   3.5  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   3.5  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   3.5  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    27   4.7  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    26   6.1  
Z66513-1|CAA91329.3|  426|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  AYRNKQYKFYSPIRDYSKEESPAPK 14
           A RNKQ+  YS   D S+    APK
Sbjct: 751 AVRNKQFNMYSENGDLSRPSDSAPK 775


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  AYRNKQYKFYSPIRDYSKEESPAPK 14
           A RNKQ+  YS   D S+    APK
Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  AYRNKQYKFYSPIRDYSKEESPAPK 14
           A RNKQ+  YS   D S+    APK
Sbjct: 809 AVRNKQFNMYSENGDLSRPSDSAPK 833


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  AYRNKQYKFYSPIRDYSKEESPAPK 14
           A RNKQ+  YS   D S+    APK
Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  AYRNKQYKFYSPIRDYSKEESPAPK 14
           A RNKQ+  YS   D S+    APK
Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  AYRNKQYKFYSPIRDYSKEESPAPK 14
           A RNKQ+  YS   D S+    APK
Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 110 SSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVLA 253
           S C  +   Y   D  Y T LHH+L   IH   + P +S + RG  ++
Sbjct: 69  SMCHLLRSSYPDYDISYLTSLHHLL---IHF--NIPSSSYSARGKTMS 111


>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 29  FLLRVVSDGRIELVLLVPVSLPWFRXWSSCSKIHQDYAKPDA-EYRTQLHHILSPHIHTE 205
           F + V +   I  ++++P+   +   + S   I  D+ K  + +   Q+H I  PH+   
Sbjct: 16  FAIVVSTVAVIAAIVILPMLYSYVAGFQSHLIIEADFCKTRSRDMWAQIHDIDGPHLFHR 75

Query: 206 GSKPYASSN 232
             + Y+S N
Sbjct: 76  QKRQYSSPN 84


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 178 HPIPTHTYRGIKALCFFKLERLSPCILNYLI 270
           H IP     G+K LCFF    +S  IL +L+
Sbjct: 5   HLIPRALLLGLKNLCFFVFPFVSFIILMFLV 35


>Z66513-1|CAA91329.3|  426|Caenorhabditis elegans Hypothetical
           protein F54D5.2 protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 161 YTLRLALRNPDVSWNK 114
           YTL    +N D+SWNK
Sbjct: 27  YTLPFVTKNNDISWNK 42


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 58  NRTCTACSC-KPPMVQGLVFLFQDTSGLRK 144
           N+T  +  C KPPM  G  F+++DT    K
Sbjct: 755 NKTQRSVLCSKPPMKNGTPFVYKDTDNSSK 784


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 191 VGIGCGGAVFYTLRLALRNPDVSW 120
           +GIGCGG  ++ L   L +P+ +W
Sbjct: 320 IGIGCGGPAWF-LTSELVDPEYAW 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,017
Number of Sequences: 27780
Number of extensions: 171168
Number of successful extensions: 490
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)