Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C07
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        28   1.3  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.5  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   9.5  

>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 29  ICRHRFHSGLSFLC 70
           IC+H+FHS   FLC
Sbjct: 90  ICKHKFHSSTVFLC 103


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 448 LVK*KFIIILTYSHQHLLNKPME*NKRAKAQQILVKNNSY 329
           L K K I +      HLL+KP   N +A A+  L+K+ +Y
Sbjct: 87  LRKDKNISVKDLDEFHLLDKPAANNTKADAEACLLKSKNY 126


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 515 KIY*GQFSRRTLILSALVLISCDESFDRFF 604
           K Y G+F +  LI   L+ + CD + DR F
Sbjct: 276 KKYVGRFVKHPLIDDLLIPVICDNAVDRHF 305


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 32  CRHRFHSGLSFLCXXIFXFKCRC 100
           C+ R HSGL   C      KC C
Sbjct: 353 CKKRCHSGLCGACFEPINAKCYC 375


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 639 LNRLRKIYQNYSKNLSKDSSHEIRTNADSIKVLLE 535
           L R RK+     K+  + SSHEI    D  K  L+
Sbjct: 120 LQRFRKVRIAEKKDSEQPSSHEIHLTDDDDKTTLQ 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,557
Number of Sequences: 5004
Number of extensions: 42465
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)