Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C07
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    29   0.039
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 645 EELNRLRKIYQNYSKNLSKDSSHEIRTNADS 553
           E+LNR+ K Y NY    +KD + EI T   S
Sbjct: 448 EQLNRMYKSYPNYIDKETKDMNLEISTRPKS 478


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 621 IYQNYSKNLSKDSSHEIRTNADSIKVLLEN 532
           IYQN   +  + SSH +  N+D +    EN
Sbjct: 213 IYQNADDSFHRLSSHTLNHNSDKMSDQQEN 242


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 283 CNVEKNNVL*ISKSYYTNC 339
           CN  +NN   IS SY   C
Sbjct: 164 CNSPENNTCSISNSYTNGC 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,961
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)