Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_C01
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               27   3.5  
SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)                     27   3.5  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             27   3.5  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         27   6.1  
SB_53530| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              26   8.0  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 240  KPNSLSHPAGV--EKGLPSPALCPAGTMNPWR 151
            KP     P G    +G P P  CP G+ NP+R
Sbjct: 2015 KPYGTDCPNGTYCPEGTPIPVPCPKGSYNPYR 2046


>SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 113 PAMPEALSRHHRNGNTDKMPFNH 45
           P + E L+ H R    D MPF+H
Sbjct: 2   PILEEGLALHQRQATKDLMPFHH 24


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 350 GRPMISSCFEVTQRTNSAKNVQIHDSIP 267
           GRP+IS C   T++ +   +  I DS+P
Sbjct: 366 GRPVISGCNTSTEKISEFVDYHIKDSVP 393


>SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 623

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = -3

Query: 350 GRPMISSCFEVTQRTNSAKNVQIHDSIPCFGLLHNGRSPTHFHIQLGWKKGCHRRHCVLQ 171
           GRP+IS C   T++ +   +  I D +P   +  + +   HF + +    G   +  +L 
Sbjct: 336 GRPVISGCNTCTEKISEFVDFHIKDLVP--SIPSHIKDTKHF-LNIVRDMGTFPQGAILV 392

Query: 170 ER*ILGVYL 144
           +  ++G+YL
Sbjct: 393 KAYVVGLYL 401


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 113 PAMPEALSRHHRNGNTDKMPFNH 45
           P + E L+ H R    D MPF+H
Sbjct: 212 PILEEGLALHQRQATKDLMPFHH 234


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 201 GLPSPALCPAGTMNPW 154
           G  +P  CP GT NPW
Sbjct: 232 GSATPIPCPTGTFNPW 247


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 226  FTSSWGGKRAAIAGTVSCRNDESL 155
            + SS GG +A  + T +C NDES+
Sbjct: 1299 YKSSMGGGKAVKSDTRTCENDESV 1322


>SB_53530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 88  RLKASGIAGVFQLHSE*VYK*TPRIHRSCRTQCRRWQPFFHPS 216
           RL  +  A + Q+H+   Y  T R+H S +TQ +    + +PS
Sbjct: 239 RLSKNTQATLIQVHTGFAYPSTHRLHLSKKTQAKLITGYAYPS 281


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 223 TSSWGGKRAAIAGTVSCRNDESLASIYKLIQ-NEAEKLLLC 104
           T +WG +R A    VSC+ +E ++++ + +   E    ++C
Sbjct: 8   TENWGEQREARFYAVSCQGNEDISTMLRTLSLKELNPHIIC 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,483
Number of Sequences: 59808
Number of extensions: 235484
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)