Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B23
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   2.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.8  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 204 RAHHLFQNITMSSIIRNIFSLSFFYSIGTYLYNTIL 311
           R  +++  +++ S   NI+S+ FFY    Y Y  IL
Sbjct: 24  RCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNIL 59


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 24.2 bits (50), Expect(2) = 2.1
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = -3

Query: 364  VACFCVRYYHIDNYTMFDKIVLYKYVPIE*KNESE----KILRIILDIVMFWNR**ALEQ 197
            V C C  +  +++Y    KIV+     +E    SE    K++R+I D++  ++R   L +
Sbjct: 1103 VPCLCSLFTRLNDYERLKKIVVSCLKSLEEARHSENNFQKMVRLI-DLIGLFSRYGDLNR 1161

Query: 196  -SERWISNLSILS 161
             ++ W  +L  +S
Sbjct: 1162 INDDWKHSLDFIS 1174



 Score = 20.6 bits (41), Expect(2) = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 175  LSILSFCKRLCLLKLYIIKSPLMNSLIN 92
            + I+    R+CL +  +  SPLM S ++
Sbjct: 1201 IHIIDNMSRICLRETSLFISPLMLSTLD 1228


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 156 QNESIDRLLIHRSDCSRAHHLFQNITMSSIIRNIFSLSFFYSIGTYLYNTI 308
           Q++S+D  L+   D   +HH     T  S+I    S   FY++  Y + ++
Sbjct: 121 QHQSLDSFLLSLFDLLCSHHFSVEFTSISLIIK-SSQWLFYTLSDYAHESL 170


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 202 LELITYSKT*LCLVLFVIFSHFH 270
           L+++  S   LCL+ F+++S+FH
Sbjct: 551 LKILFISLCILCLLQFIVYSYFH 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,263
Number of Sequences: 5004
Number of extensions: 34701
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)