Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B22
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   4.9  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   6.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 25/99 (25%), Positives = 40/99 (40%)
 Frame = -2

Query: 720 PNSCRXTLTPSRFTTTLSLPXRGLRYPATVTCLSIARXTATPRALSMPTTTLALSIITGQ 541
           P S    LT +  TT+ S+P      P T T L+    T    + S+P T+  ++     
Sbjct: 415 PTSSSTPLTTTNCTTSTSVPYTST--PVTSTPLATTNCTT---STSVPYTSTPVTSTPLT 469

Query: 540 STTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHLAT 424
           +T C  +  +    STP       +T    ST   + +T
Sbjct: 470 TTNCTTSTSIP-YTSTPVTSTPLTTTNCTTSTSVPYTST 507


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 533 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 447
           R+ ++ +WS  LRRP     P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -2

Query: 702 TLTPSRFTTTLSLPXRGLRYPATVTCLSIARXTATPRALSMPTTTLALSIITGQSTTCQD 523
           TL  S  T T+S P     Y    +  S+   T    + +  T     S  T  S + QD
Sbjct: 236 TLESSSLTNTVS-PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQD 294

Query: 522 ACDVELIPST 493
           +  ++  PST
Sbjct: 295 STTIDSTPST 304


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 508 VDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD 407
           +D  D  +    H D+LAA    YPS +G++  D
Sbjct: 691 LDMQDLKEKASKHADKLAAFMVTYPSTFGIFEPD 724


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 412 KDRAYPITDLTAPLIDPLK--PKSLKGIEYEPDN 317
           K RAYP  D   P++D L+    +L+  EY   N
Sbjct: 379 KYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRN 412


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = -1

Query: 736 RRSVFPELLSTYPYSKSIYDDPIAAXERITVPGYRYLPVHREXYGYSPRPIYAHNYPRSX 557
           RR V+      YP  K  Y    +A +    PG       R     SP    A    R  
Sbjct: 665 RRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIA 724

Query: 556 DYYRPIYH 533
           DY R +YH
Sbjct: 725 DYSRKVYH 732


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = -2

Query: 645  YPATVTCLSIARXTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTIS 466
            Y  + +  S +    +    S+ +++L+ SI  G S +         +PST + H  +IS
Sbjct: 3634 YDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSIS 3693

Query: 465  TGWLPST 445
                P+T
Sbjct: 3694 DTKSPAT 3700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,626
Number of Sequences: 5004
Number of extensions: 47127
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)