Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B20
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   212   5e-56
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   212   5e-56
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    30   0.39 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.91 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.7  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  212 bits (517), Expect = 5e-56
 Identities = 103/177 (58%), Positives = 122/177 (68%)
 Frame = -1

Query: 680 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 501
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 500 XXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYW 321
                            G TYGKP   GVN LK  R+ +  AEE           L+SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 320 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGQG 150
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+G+G
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKG 177



 Score = 32.3 bits (70), Expect = 0.074
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 154 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 68
           KGHR++ +    + A WLR NTL LRR R
Sbjct: 176 KGHRFNNSP---QHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  212 bits (517), Expect = 5e-56
 Identities = 103/177 (58%), Positives = 122/177 (68%)
 Frame = -1

Query: 680 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 501
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 500 XXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYW 321
                            G TYGKP   GVN LK  R+ +  AEE           L+SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 320 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGQG 150
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+G+G
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKG 177



 Score = 33.9 bits (74), Expect = 0.024
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 154 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 68
           KGHRY+ +    + A WLR NTL LRR R
Sbjct: 176 KGHRYNNSP---QHATWLRHNTLSLRRYR 201


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 192 SDFGWSQLPRSRXRDIDTLKQREAHAGQLGSDATLFNYVANDKHLSKTVSD 40
           SD  W +L R+R ++    KQ E     +G +   F+   ND+HL +  +D
Sbjct: 248 SDDEWLRLHRTRIKE----KQPEEEVSVVGDELKSFDKENNDEHLERVTND 294


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 319 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 206
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 314  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 210
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,546
Number of Sequences: 5004
Number of extensions: 58185
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)