Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B17
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    46   4e-06
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    29   0.38 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   2.0  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.2  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   8.2  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   8.2  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -2

Query: 575 DEDVPFSN--GLVLNERGCVIDEANELGKLYVAGWLGTGPVGVILHTMGNAFQVAKTICD 402
           D  VPF +  G+V N  G V         +Y +GW+  GP+GVI  TM +AF  A TI  
Sbjct: 347 DVGVPFDDAKGIVKNVNGFVRPG------IYTSGWVKHGPIGVIATTMMDAFATADTITK 400

Query: 401 DLKNKADYSKS 369
           D K+K ++ K+
Sbjct: 401 DWKSKKEFLKN 411


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 563 PFSNGLVLNERGCVIDEANELGKLYVAG 480
           P S G  ++E  CV++  ++ GK+YVAG
Sbjct: 361 PNSQGAQISEEYCVLNAPSKQGKVYVAG 388


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 451 ITPTGPVPSHPATYSXPSSLASSITQPLSFKTSPLLNGTSSSA 579
           +TP   VPSH  TY+    L   + +     +S LL     SA
Sbjct: 571 LTPKVVVPSHKETYTDEKKLIDELDRVNPLNSSQLLRSKRKSA 613


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 211 LAIAIIFSTLQIFSRGFPRFLPSSISNLSIFCQPSQSTISVL 336
           LAI ++FSTL I         P+ I   SI C  + +   +L
Sbjct: 115 LAIVVVFSTLSIVLTILKYLAPAYIRQWSISCLTTSTAACLL 156


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 515 EANELGKLYVAGWLGTGPVGVILHTM 438
           +AN  G LYV+G  GTG   V+LH +
Sbjct: 188 DANAGGALYVSGAPGTGKT-VLLHNV 212


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 454 TPTGPVPSHPATYSXPSSLASSIT--QPLSFKTSPLLNGTSS 573
           TP+ P+  +  TYS P S  S+      LSF ++  L G S+
Sbjct: 435 TPSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYST 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,720
Number of Sequences: 5004
Number of extensions: 38768
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)