Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B17
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0435 + 10206569-10206730,10207126-10207230,10207897-102079...    36   0.032
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    33   0.17 
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    31   0.52 
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   0.68 
02_05_1351 - 35855543-35856751                                         28   4.8  
11_06_0207 + 21214631-21216121                                         28   6.3  
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    28   6.3  
06_01_1112 - 9157776-9158149,9158248-9161158                           27   8.4  

>02_02_0435 +
           10206569-10206730,10207126-10207230,10207897-10207986,
           10208256-10208369,10208477-10208530,10208951-10209067,
           10209530-10209639,10209752-10209825,10209921-10209982,
           10210240-10210435,10210506-10210569,10210789-10210832,
           10210974-10211116,10211521-10211751
          Length = 521

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
 Frame = -2

Query: 551 GLVLNERGCVIDEANELGK----LYVAGWLGTGPVGVILHTMGNAFQVAKTICDDLK--- 393
           G+V N +G V+   +E       LYV GWL  GP G++   +  A +   +I +D K   
Sbjct: 398 GIVPNLKGRVLSSESENATVEPGLYVVGWLKRGPTGIVATNLHCAEETVASILEDDKKGL 457

Query: 392 --NKADYSKSG-FAEFXXXXXXXXXXXDWEGWQKID 294
               +D  K G                 ++GW+KID
Sbjct: 458 FMGPSDSKKQGRRGLLEILEQKNIRFVPFDGWEKID 493


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 238 LQIFSRGFPRFLPSSISNLSIFCQPSQST 324
           L +F+  F  F+P S+SNLS  C P QS+
Sbjct: 420 LGLFNNNFTGFIPPSLSNLSQLCFPQQSS 448


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -2

Query: 584 IXADEDVPFSNGLVLNERGCVIDEANELGKLYVAGWLGTGPVGVILHT 441
           + +D++ P +  +  N   CV+D A  +G+ +  GW   GP G+++H+
Sbjct: 311 LPSDQETPVAGNVYSN---CVVDAALFMGRSFRVGW---GPNGILVHS 352


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 460  TGPVPSHPATYSXPSSLASSITQPLSFKTSPLLNGTSSS 576
            T P+ S  +    P+SL+ S T P+   TSP+ N TSS+
Sbjct: 1651 TSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSA 1689


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 454 TPTGPVPSHPATYSXPSSLASSITQPLSFKTSPLL 558
           +P+ P+P+ P     PSS +S    P  F  SP L
Sbjct: 178 SPSPPIPATPLPRVHPSSSSSPSPSPYRFPASPQL 212


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 368 HFYYNQLCFSDH-HKSFLLLEMHFPWC 445
           H YY    F D   +SF+++ +H+P+C
Sbjct: 225 HLYYKAFVFPDPLTRSFIVVVIHYPFC 251


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 454  TPTGPV--PSHPATYSXPSSLASSITQPLSFKTSPLLNGTSSS 576
            +PT PV  P+ PA YS P+S A S T P    TSP  + TS S
Sbjct: 1642 SPTSPVYSPTSPA-YS-PTSPAYSPTSPSYSPTSPSYSPTSPS 1682


>06_01_1112 - 9157776-9158149,9158248-9161158
          Length = 1094

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 205 SDLAIAIIFSTLQIFSRGFPRFLPSSISNLS 297
           S L+  I  STL I+S  F   LP S+ NLS
Sbjct: 438 SILSNCINLSTLYIYSNHFTGSLPGSVGNLS 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,135,922
Number of Sequences: 37544
Number of extensions: 203439
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)