Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_B17
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-4|CAB60604.1| 458|Caenorhabditis elegans Hypothetical ... 38 0.005
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 32 0.35
AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 30 1.1
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 30 1.4
U42437-3|AAA83495.1| 297|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 2.4
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 2.4
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 2.4
U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z82284-3|CAB05293.1| 350|Caenorhabditis elegans Hypothetical pr... 28 5.7
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 27 7.5
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 27 7.5
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 27 7.5
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 27 7.5
>AL132865-4|CAB60604.1| 458|Caenorhabditis elegans Hypothetical
protein Y62E10A.6 protein.
Length = 458
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = -2
Query: 497 KLYVAGWLGTGPVGVILHTMGNAFQVAKTICDDLKNKADYSKSGFAEFXXXXXXXXXXXD 318
++Y GW GP G+I+ T + VA I D D + +G E
Sbjct: 362 QVYATGWCAHGPHGIIVDTQQQSIFVADQIAADFAQFKDSTSNGVEEL--LEDRKVPFIS 419
Query: 317 WEGWQKIDK 291
W+ W++ID+
Sbjct: 420 WDEWKQIDR 428
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 436 PMVCKITPTGPVPSHPATYSXPSSLASSITQPLSFKTSPLLN 561
P K TPT P + +T + PS++ SS T P + KTS + N
Sbjct: 416 PTTMKSTPTTPT-TMKSTPTTPSTMKSSPTTPTTMKTSSITN 456
>AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical
protein Y116A8C.14 protein.
Length = 861
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 78 QTILLFLIFMSNKHSNTTIDIHKIIFFISFSLXLTIILNNVKF*FSYCYHF 230
Q I FL N + + I I+F I S+ L + NVK +C HF
Sbjct: 790 QVIWKFLRKKFNNKRSFYVFISAIVFSILLSILLVVFFGNVKIDCPWCTHF 840
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 181 LLSLTMLNSDLAIAIIFSTLQIFSRGFPRFLPSSISNLSIFCQPSQSTISVLSFTISLNS 360
L+S +M+ S +F+ IFS F F PS +NL IF S+ + LNS
Sbjct: 167 LVSNSMIFSYFLEFSLFTNFVIFSNFFIHFSPSEPTNLPIFFSSSRPLVLFQKSPFFLNS 226
>U42437-3|AAA83495.1| 297|Caenorhabditis elegans Hypothetical
protein F30B5.6 protein.
Length = 297
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 196 MLNSDLAIAIIFSTLQIFSRGFPRFLPSSISNLSIFCQPSQSTI 327
M + IA++ S + IFS P F+ S +SN+ S +T+
Sbjct: 208 MFSKATQIALLDSAVVIFSNILPVFVSSQLSNIDFLITSSMTTV 251
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 470 TGPVGVILHTMGNAFQVAKTICD 402
TGPVG++ +GN QV CD
Sbjct: 40 TGPVGMVSRAVGNLIQVGYDTCD 62
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 470 TGPVGVILHTMGNAFQVAKTICD 402
TGPVG++ +GN QV CD
Sbjct: 40 TGPVGMVSRAVGNLIQVGYDTCD 62
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 470 TGPVGVILHTMGNAFQVAKTICD 402
TGPVG++ +GN QV CD
Sbjct: 40 TGPVGMVSRAVGNLIQVGYDTCD 62
>U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical
protein F30B5.8 protein.
Length = 294
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 217 IAIIFSTLQIFSRGFPRFLPSSISNLSIFCQPSQSTI 327
IA++ S + IFS P F+ S +SN+ S +T+
Sbjct: 215 IALLDSAVVIFSNILPVFVSSQLSNIDFLITSSMTTV 251
>Z82284-3|CAB05293.1| 350|Caenorhabditis elegans Hypothetical
protein T27E7.4 protein.
Length = 350
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 312 LPINYISLVFYYIFEFSKATFTIISFVFQIITNRFCYLKCISHGVQNNTHWSSTE 476
+PI+ I VF YI TI S V+QI+ F + +C+ G +N T + T+
Sbjct: 120 IPISIICAVFIYI-------TTIFSQVYQILVVIFIFEQCLKLG-KNETQQTETQ 166
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 484 ATYSXPSSLASSITQPLSFKTSPLLNGTSSS 576
A+ PSS SS T P S SP GTSSS
Sbjct: 775 ASSPSPSSRMSSHTAPDSLLPSPATRGTSSS 805
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 484 ATYSXPSSLASSITQPLSFKTSPLLNGTSSS 576
A+ PSS SS T P S SP GTSSS
Sbjct: 739 ASSPSPSSRMSSHTAPDSLLPSPATRGTSSS 769
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 484 ATYSXPSSLASSITQPLSFKTSPLLNGTSSS 576
A+ PSS SS T P S SP GTSSS
Sbjct: 775 ASSPSPSSRMSSHTAPDSLLPSPATRGTSSS 805
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 484 ATYSXPSSLASSITQPLSFKTSPLLNGTSSS 576
A+ PSS SS T P S SP GTSSS
Sbjct: 775 ASSPSPSSRMSSHTAPDSLLPSPATRGTSSS 805
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,384,799
Number of Sequences: 27780
Number of extensions: 209716
Number of successful extensions: 660
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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