Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B17
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 300 LLPTLPINYISLVFYYIFEFSKA 368
           L+ ++P++YI L+F    +FS++
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSES 195


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 300 LLPTLPINYISLVFYYIFEFSKA 368
           L+ ++P++YI L+F    +FS++
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSES 195


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 300 LLPTLPINYISLVFYYIFEFSKA 368
           L+ ++P++YI L+F    +FS++
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSES 195


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 578  ADEDVPFSNGLVLNERGCVIDE 513
            ADED+  +N    +E  C++D+
Sbjct: 1427 ADEDLLINNVFYEDETSCMLDK 1448


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 301 FCQPSQSTISVLSF 342
           FCQP+Q T+S + +
Sbjct: 24  FCQPTQRTMSKIQW 37


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 375 TIISFVFQIITNRFCYLKCISHGV 446
           TIIS VF    N  CYL  +   V
Sbjct: 304 TIISSVFTTRHNATCYLSHVDPDV 327


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 375 TIISFVFQIITNRFCYLKCISHGV 446
           TIIS VF    N  CYL  +   V
Sbjct: 10  TIISSVFTTRHNATCYLSHVDPDV 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,157
Number of Sequences: 438
Number of extensions: 2447
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)