Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B16
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    28   0.52 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   4.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.8  
SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomy...    25   4.8  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   6.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   6.4  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   6.4  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    24   8.5  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   8.5  

>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 232 KFCPVTNSIAKSVLLEQS*I*YLSQHINITYIRIDPFNLHKISI 363
           K+CP TN +  SVL+    +  +  H + T + I+ FN+H+  I
Sbjct: 91  KYCPATNDVFLSVLIY---LDRIVHHFHFT-VFINSFNIHRFLI 130


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 214 FYKNFLIFFYCTVMLPFI 161
           F+++FL  F+C +  PF+
Sbjct: 279 FFQHFLARFFCLIFFPFL 296


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 272 CLNKVKFDICHNILILHTYELTLS 343
           C NK+   +CHN LI  +  L +S
Sbjct: 564 CSNKIIHTVCHNSLIYFSSGLKMS 587


>SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 67

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 81  KNYNVIPFANTRWHNDAQERTK 16
           K +    F  TRW N AQE+T+
Sbjct: 35  KTHGDAEFLYTRWKNGAQEKTE 56


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 132  EHSDLFVFNNDNAIKSKKNYNVIPFANTR 46
            EH DLFV   D   K K N      ++TR
Sbjct: 1200 EHPDLFVVKTDQPTKRKYNRKAPTKSSTR 1228


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 176 DCTIKKYQKVFVKSIWTILSSVQ*QI 253
           +C +K+Y   F+KS + + ++VQ Q+
Sbjct: 919 ECMLKEYYDTFLKSPFAVPNAVQAQL 944


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 117  FVFNNDNAI-KSKKNYNVIPFANTRWHNDAQERTKGRXAG 1
            F F N N + K+KKN  V+P  N     D    +K R  G
Sbjct: 1128 FKFANANQVSKTKKNLKVLPLYNRFEKPDEWRISKQRKGG 1167


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 140 KIKPKP*NKW*HDCTIKKYQKVFVKSIWTILSSVQ*QILLQNQFCLNKVKFDICHNIL 313
           K+  +   +W ++ T+ K+   F++++ TIL S     L + Q  L +V    C  ++
Sbjct: 288 KLSKEVAQRWEYEQTLLKHYAKFLQTLETILKSFS-STLDETQLSLYQVAVRCCTKLI 344


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 206 FVKSIWTILSSVQ*QILLQNQFCLNKVKFDICHNILILHTYELTLSIYIKYPFT*SYK 379
           F+  +  I+ +   +ILL++ +C N      C  IL    YE  L  Y  Y    +Y+
Sbjct: 172 FIYGMCYIIRNNANRILLESCYCENSTGMSTCPRILEFMPYEPLLK-YNSYRLLSTYE 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,586
Number of Sequences: 5004
Number of extensions: 28811
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)