Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B16
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...    29   1.2  
12_02_0502 - 19746100-19746185,19746745-19750474                       27   4.7  

>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 126 SDLFVFNNDNAIK-SKKNYNVIPF 58
           +DLF    DNA+K SKKN N+ PF
Sbjct: 48  ADLFHLKRDNAVKYSKKNDNIRPF 71


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 17   LVLSCASLCHLVLANGITL*F---FLDFMALSLLNTNKSECSSF 139
            LV  CA LCHL  ANG T      FL+ +A  +L   K++ + F
Sbjct: 965  LVRHCAKLCHLP-ANGFTELHHLNFLEIVACPMLRNVKTDSNLF 1007


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,740,996
Number of Sequences: 37544
Number of extensions: 137170
Number of successful extensions: 240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)