Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B16
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   0.61 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   0.61 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   0.61 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   4.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 144 ILKLEHSDLFVFNNDNAIKSKKNYNVIPFANTR 46
           ++ ++  D+++   DN + S   YNVI    T+
Sbjct: 82  VVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTK 114


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 144 ILKLEHSDLFVFNNDNAIKSKKNYNVIPFANTR 46
           ++ ++  D+++   DN + S   YNVI    T+
Sbjct: 82  VVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTK 114


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 144 ILKLEHSDLFVFNNDNAIKSKKNYNVIPFANTR 46
           ++ ++  D+++   DN + S   YNVI    T+
Sbjct: 82  VVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTK 114


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 193 ISKSFCKINMDNFKF 237
           I KSFC+I+++ F F
Sbjct: 140 IYKSFCEIDVEYFPF 154



 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 245 TGQNLKLSILILQKLFDIFLLYSHV 171
           +G+ + LSI IL  L   FLL + +
Sbjct: 264 SGEKVSLSISILLSLTVFFLLLAEI 288


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 272 CLNKVKFDICHNILILHTYELTLSIYIKY 358
           C N + F IC + L+   YE T    +K+
Sbjct: 128 CENGLNFIICFSKLLSDMYEDTFEDTLKH 156


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 126 SDLFVFNNDNAIKSKKNYNV 67
           S++  +NNDN    K  YN+
Sbjct: 91  SNISNYNNDNNYNKKLYYNI 110


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 126 SDLFVFNNDNAIKSKKNYN 70
           SDLFVF++ N   ++ NY+
Sbjct: 117 SDLFVFDDLNDYINRLNYS 135


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 245 TGQNLKLSILILQKLFDIFLLYSHV 171
           +G+ + LSI IL  L   FLL + +
Sbjct: 268 SGEKVSLSISILLSLTVFFLLLAEI 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,841
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)