Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_B14
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 29 2.3
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 28 5.3
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538... 28 5.3
11_01_0645 + 5185341-5185568,5185773-5185823 28 7.0
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 28 7.0
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 28 7.0
08_01_0888 + 8719416-8719720,8719747-8720482 28 7.0
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 28 7.0
04_03_0368 + 15004949-15005659,15005789-15005848 28 7.0
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413... 28 7.0
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 7.0
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 28 7.0
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 27 9.3
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 611 GNXLGNAANKKSLKDKLGASAELSD 537
GN +GN +N+ SLKD + A A+ +D
Sbjct: 27 GNNIGNFSNQPSLKDVVSAQAKTTD 51
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -2
Query: 330 LPQGSFRQAPEL-PGRQGCRAHRRSSADDPRSGCYDRGLRSSG---PVRQRAVVPQRGGH 163
+P+ F AP L PG ++ + P+ YDR + S+ P RQR+ +RG
Sbjct: 998 IPKSEF--APMLFPGYAPFHGEQQERRNQPKREAYDRWIHSTRPTLPTRQRS--QERGQQ 1053
Query: 162 RPRQATLPAVHSQG 121
R R++ L + G
Sbjct: 1054 RKRRSALQRLTVNG 1067
>04_03_0191 -
12452369-12452499,12452875-12453077,12453641-12453835,
12454301-12454809
Length = 345
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 149 AWRGRWPPRCGTTARWRTGPLERKPR 226
A R RW G RWR P +PR
Sbjct: 136 ARRARWGKEVGQRGRWRVAPEPERPR 161
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 342 RRGALPQGSFRQAPELPGRQGCRAHRRSSA 253
R GA P+G RQA ++ RQ RA R A
Sbjct: 38 RVGARPRGGSRQAGQIAERQSGRASREQQA 67
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 611 GNXLGNAANKKSLKDKLGASAELSD 537
GN GN +N+ SLKD + A AE +D
Sbjct: 306 GNNNGNFSNQPSLKDLVFAQAETTD 330
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 119 KRQMALANSLLPGLGLIKWENKDYKIRWDLPG 24
K+ + + NS++PGL L +W N + LPG
Sbjct: 350 KKDLNIQNSVVPGLNLAQWMNMQHSS--SLPG 379
>08_01_0888 + 8719416-8719720,8719747-8720482
Length = 346
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 614 AGNXLGNAANKKSLKDKLGASAELSD 537
AGN GN +N+ SLKD + A A+ +D
Sbjct: 41 AGNNNGNFSNQPSLKDLVFAQAKTTD 66
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 611 GNXLGNAANKKSLKDKLGASAELSD 537
GN GN +NK SLKD + A A+ +D
Sbjct: 211 GNNNGNFSNKPSLKDLVFAQAKTTD 235
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 137 AGRVAWRGRWPPRCGTT--ARWRTGPLERKPRS*HPDLGSSADERR*ARQPCRP 292
+GR GR R TT WR G R+ R PD GS RR R+ +P
Sbjct: 82 SGRQIRHGRGEARWRTTDLEPWRRGGRRREGRRLRPDGGSGLHLRRLCRRRFQP 135
>04_01_0303 +
4132988-4133184,4133701-4134202,4134261-4134638,
4134657-4135301
Length = 573
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 617 LAGNXLGNAANKKSLKDKLGASAELSD 537
L GN GN +N+ SLKD + A A+ +D
Sbjct: 139 LGGNNNGNFSNQPSLKDLVFAQAKTTD 165
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 350 IQSDVERFLKDPSVKHLNSLGDRAAELIDAHLQMIRDPDAMTEAYAQA 207
I++ R +DP + GD A L AH ++ D ++ +YA A
Sbjct: 455 IEARARRLREDPDPATAPASGDAAEALAAAHRALLASRDVLSRSYAFA 502
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 366 FWKRRHTVRRGALPQGSFRQAPELPGRQGCRAHRRSSADDPRSG 235
+WK R+ VR G P+ + + + R G + +PR+G
Sbjct: 218 WWKERNEVREGGTPRSPAKLSHPIMSRAGEFVRMNAKDKNPRTG 261
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 27.5 bits (58), Expect = 9.3
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = -2
Query: 357 RRHTVRRGALPQGSFRQAPELPGRQGCRAHR-----RSSADDPRSGCYDRGLRSSGPVRQ 193
R H +RR P R+ P+ R+ HR R +A PR D R P R
Sbjct: 124 RDHRIRRTPSPYRDRRRIPDYHPRRTPSPHRDRDRDRHAAGRPRGRGDDD--RDRDPPRG 181
Query: 192 RAVVPQRGGHRPR 154
R+ P RG R R
Sbjct: 182 RSPPPYRGDDRGR 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,545
Number of Sequences: 37544
Number of extensions: 222938
Number of successful extensions: 802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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