Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B13
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.6  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 300 QIGQHKLRSVND*QNANALRPSHRLWRLKLSSIRNSLHN 416
           +I +  + S     N NA RP   L ++ + S+RN  H+
Sbjct: 188 EIDEEDVPSTESRGNLNARRPQSGLLKITVGSLRNVTHS 226


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 342 NANALRPSHRLWRLKLSSIRNSLHNIYHNYKVY 440
           NANA  P H      L ++ N    ++H++K++
Sbjct: 287 NANAKEPMHHFSFTDLDTLLNWPKYVFHHHKIH 319


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 474 SILITIRSHRGHKPYNCGI-YCEVSYG*SLISIAITDVMASVH 349
           +++  +RSH G KP+ C +  C+ S+     S A+   M +VH
Sbjct: 92  ALVAHLRSHTGEKPFICSVPECDRSF---TRSDALAKHMRTVH 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,718
Number of Sequences: 5004
Number of extensions: 42840
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)