Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B13
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0312 - 16259612-16260231,16260264-16262796                       30   1.7  
09_03_0147 + 12763526-12763815,12763938-12764067,12764185-127644...    29   3.8  
11_03_0060 - 9406273-9407142                                           28   6.7  
01_06_0282 - 28160321-28160417,28160585-28160653,28161090-281611...    28   6.7  
11_03_0068 + 9564354-9565180,9566658-9568704                           27   8.9  
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297...    27   8.9  

>11_04_0312 - 16259612-16260231,16260264-16262796
          Length = 1050

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 446 RCD--RMVIRIESITNTSRNHRAKLG*HIEIHKQSITIALLSKTLG 577
           +CD  R VI  +S TN   N  A+   H+E+ ++S T A LSK  G
Sbjct: 831 KCDSLRSVIHFQS-TNNPTNQLARNCQHLELGRKSTTTAYLSKPKG 875


>09_03_0147 +
           12763526-12763815,12763938-12764067,12764185-12764435,
           12764546-12764750,12764878-12764918,12765006-12765131,
           12765429-12765502,12765671-12765891,12766251-12766345,
           12766463-12766679,12766781-12766906,12766988-12767086,
           12767171-12767380,12767496-12767606
          Length = 731

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 243 KIIQ**LSTMLGLAESLLLTIKSFACWL*FYW-FYRCFFSTLNANSL 106
           K +Q    TMLGL  S+  + KS  C   F W   RCF S+  A+S+
Sbjct: 443 KFVQDAKVTMLGLVPSIARSWKSTDCTAGFDWSTIRCFSSSGEASSV 489


>11_03_0060 - 9406273-9407142
          Length = 289

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 232 LYNFQLHSYYLFPI 273
           LYNFQ+ +YY FPI
Sbjct: 208 LYNFQMTTYYCFPI 221


>01_06_0282 -
           28160321-28160417,28160585-28160653,28161090-28161145,
           28161650-28161741,28162314-28162398,28162512-28162628,
           28162766-28162798,28163109-28163199,28163908-28163967,
           28164115-28164180,28165238-28165430,28165665-28165821
          Length = 371

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 576 PSVLDKRAMVIDCLCISIC*PSLARWFLLVLVIDSILITIRSH 448
           PS++ K++  + C  +S+    L+ WF+L  ++   L ++ +H
Sbjct: 293 PSIMGKKSGCLVCSLVSLIPEFLSNWFILRKLVKFTLSSLVNH 335


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 232 LYNFQLHSYYLFPI 273
           LYNFQ+ +YY FPI
Sbjct: 757 LYNFQMITYYCFPI 770


>01_04_0018 +
           15128174-15128316,15128445-15128544,15129573-15129758,
           15129877-15129924,15130006-15130209,15130476-15130565,
           15130667-15130747,15130827-15130889,15131794-15131832,
           15131914-15132000,15132103-15132252,15132331-15132386,
           15132493-15132775,15132989-15133132,15133233-15133451,
           15133528-15133695,15133868-15133969
          Length = 720

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 415 IYTTIIRFMTTV*PNGY*NRIYNQYKQ 495
           +YTT+    T   PN Y   +Y++YKQ
Sbjct: 46  LYTTVYNMCTQKPPNDYSQVLYDRYKQ 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,254,053
Number of Sequences: 37544
Number of extensions: 224336
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)