Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B13
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.14 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   1.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 456 RSHRGHKPYNCGIYCEVSYG 397
           R+H G KPY C I C  S+G
Sbjct: 224 RTHTGEKPYTCDI-CGKSFG 242



 Score = 26.2 bits (55), Expect = 0.25
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 456 RSHRGHKPYNCGIYCEVSY 400
           R+H G KPY C  YC  S+
Sbjct: 112 RTHTGEKPYQCE-YCSKSF 129



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 471 ILITIRSHRGHKPYNC 424
           ++I +R+H G KPY C
Sbjct: 191 LVIHMRTHTGEKPYVC 206


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 459 IRSHRGHKPYNC 424
           IR+H G KP++C
Sbjct: 62  IRTHTGEKPFSC 73


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 459 IRSHRGHKPYNCGIYCE 409
           +R H G KPY+C  +C+
Sbjct: 29  MRLHTGEKPYHCS-HCD 44



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 456 RSHRGHKPYNC 424
           R+H G KP+ C
Sbjct: 2   RTHTGEKPFEC 12


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 483 PIQAETIELS*VSILKYINNLLPLPSCLRHWGN*EWSNYLVP 608
           P++  T+ L+  S+   I NL+ +   + HW       +LVP
Sbjct: 262 PVRKATLFLNMASVFMRIFNLICMMLLIGHWSG--CLQFLVP 301


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 305 NLIPTAKNHIFIGNK 261
           N++   +NH+FIG K
Sbjct: 804 NVLRELQNHVFIGRK 818


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 539 VYVFQYANLA*LDGFCLYWL 480
           +YVFQ  +   + GFCL +L
Sbjct: 439 MYVFQLLDSYAVSGFCLLFL 458


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 539 VYVFQYANLA*LDGFCLYWL 480
           +YVFQ  +   + GFCL +L
Sbjct: 492 MYVFQLLDSYAVSGFCLLFL 511


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 459 IRSHRGHKPYNC 424
           +R+H G KP+ C
Sbjct: 8   LRNHFGSKPFKC 19


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -1

Query: 559 EGNGNRLFMYFNMLT*LSSMVSACIGYRFYSN 464
           + NG+R+F  ++++    +     +G  FY N
Sbjct: 350 DDNGDRIFAEYDIINIQENGDQVSVGRYFYPN 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,249
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)