Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B05
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    71   2e-13
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   4.5  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.5  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   5.9  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.8  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   7.8  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
 Frame = -3

Query: 541 YEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKKTYVKGDGHFVRNCIV 362
           +E W++K E+P T  SWF IT+LH+W+L  R     I    K +K             + 
Sbjct: 123 FEFWYQKCEIPMTFQSWFQITQLHLWILHTR-----IRGLPKNEKVAFS-------QALT 170

Query: 361 EALWADVSSRIKLLEGANPS-IAKKQVSELSEQFQAALVAYDEG-LSDDKILAAAIWRRF 188
              + D+  RI      N + I+   + +L +Q   A+  YD+G L  D +LA ++WR  
Sbjct: 171 TRFFEDMELRIHKDYRINSNRISGMYLKDLFQQQTGAIFGYDQGMLGSDAVLATSVWRNL 230

Query: 187 YSLSENTDVENVEKIVSFIRRQILILDKISSEE 89
           +    + D+  +E IV FIR  +  L  +S+++
Sbjct: 231 FVGRPDVDLVILETIVKFIRLNVYRLSCLSTDD 263


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 288 CFFAIDGFAPSNSLI 332
           C+F  D FAPSNSL+
Sbjct: 499 CYFCNDIFAPSNSLV 513


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 202 IWRRFYSLSENTDVENVEKIVSFIRRQILILD 107
           +W  + S   N ++EN+EKI+  +  ++L  D
Sbjct: 288 LWAVYESAVSNRNLENIEKIIKALNIKVLPRD 319


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = -3

Query: 586 LTGYFLYESIHANIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKK 407
           L G +    +H  +V +  +EK ++   L      T      L  RYM + + +  +E  
Sbjct: 185 LMGLYAIGILHG-LVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESL 243

Query: 406 TYVKGDGHFVRNCIVEALWAD 344
             +K  G +V    +  L+A+
Sbjct: 244 PTLKSSGQYVSKEDITELFAE 264


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -3

Query: 613 MDQDRTRLKLTGYFLYESIHANIVYEEWFEKLELP---DTLASWFSITELHVWLLMVRYM 443
           + +D+T  ++   F Y+  H  ++ E W     LP    TL +   +T+     ++    
Sbjct: 301 LHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL---- 356

Query: 442 AEDIAHTAKEKKTYVK 395
             ++ HT+++  TY +
Sbjct: 357 --NVVHTSEQPPTYFR 370


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 673 HSTVAAEDSYVKKFM--KAVGWMDQDRTRLKL 584
           H  +A++ S  K+ M   A+G  D DRTRL L
Sbjct: 237 HFPLASKTSDTKQLMVAAAIGTRDDDRTRLAL 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,902
Number of Sequences: 5004
Number of extensions: 54000
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)