Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_B05
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0433 - 18169930-18170029,18171183-18171307,18172192-181723... 30 1.5
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 29 3.5
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706... 29 4.6
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 29 4.6
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 28 6.1
09_01_0161 + 2401945-2402218,2402469-2402563,2402936-2403070,240... 28 6.1
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 28 6.1
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 8.0
>07_03_0433 -
18169930-18170029,18171183-18171307,18172192-18172358,
18173027-18173081,18173409-18173491,18173493-18173622,
18174482-18174691
Length = 289
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Frame = -3
Query: 517 ELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKKTYVKGDGHFVRNCIVEALWADVS 338
+L T + FS+ LH+WL++ R E DG I E DV
Sbjct: 162 QLEKTFKTTFSLLVLHMWLILRRLKEEG-------------KDGVKFGQYIYEIYNHDVE 208
Query: 337 SRIKLLEGANPSIAKKQVSELSEQFQAALVAYDEGLSDD---KILAAAIWRRFYS 182
R+ G N + K + EL + F +V YD +S + L IWR Y+
Sbjct: 209 LRVS-KAGVN-LLLTKWMKELEKIFYGNIVKYDSAISPEARQDDLVNVIWRNVYA 261
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 550 NIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKK 407
++ E W+ + +LP+ L S+ EL + + EDI H +K
Sbjct: 1023 SLTLERWYNQAQLPNWLGQLVSLKELKINRFEMNESQEDIKHLMSLQK 1070
>12_01_0774 +
7063465-7064011,7065183-7065791,7067905-7068464,
7069411-7069530
Length = 611
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 442 AEDIAHTAKEKKTYVKGDGHFVRNCIVEALWADVSSRI 329
A++I E K +G GHFVRN + A SRI
Sbjct: 165 AQNIHRDPHENKEGAQGQGHFVRNRVAIARREQYESRI 202
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 262 QAALVAYDEGLSDDKILAAAIWRRFYSLSENTDVENV 152
+AA V+ DEGL D K+ A+I Y+LS +E V
Sbjct: 163 RAARVSLDEGLEDKKVCLASIEFTGYALSWWNQLERV 199
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 367 IVEALWADVSSRIKLLEGANPSIAKKQVSELSEQF 263
++ L ADVS KLL+ AN SI ++ S +E+F
Sbjct: 403 VIGELKADVSGIPKLLQAANGSITRRNSSFGTEEF 437
>09_01_0161 +
2401945-2402218,2402469-2402563,2402936-2403070,
2403176-2403865
Length = 397
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -3
Query: 487 SITE-LHVWLLMVRYMAEDIAHTAKEKKTYVKGDGHFVRNCIVEALWAD 344
++TE LH + + RY++ED+ A++++ ++ G + N ++ +AD
Sbjct: 276 TVTEYLHEFNRLARYVSEDVCTNAEKQEKFLAGLDDELTNQLISGDYAD 324
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +1
Query: 151 LHFQHLYFLIMNKIFSILLLLKFYHH*DLHRRLQGQLEIVQRALILVSLQLM 306
+ F+ L+ +I I S+ L F+H+ +L + E+V++ +ILV +L+
Sbjct: 438 ISFRVLFAMIQENISSVARELLFHHYEELKENKITREEMVKQMIILVGEKLL 489
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +1
Query: 1 RTHFQNNLTCFISNPXQ*FSTK-VFQVSILVLHWIFYLILISDA**N*QFSLH--FQHLY 171
+T +N S Q F K VF + +L W FY++L+S N L F+ +
Sbjct: 150 KTDVSDNDKSSSSRDVQQFLWKPVFHFILWMLFWTFYVLLLSSIVLNKVGGLQEMFEKSF 209
Query: 172 FLI---MNKIFSIL-LLLKFYH 225
FLI MN +F +L L ++ H
Sbjct: 210 FLIVFNMNIVFMVLPLAIRLKH 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,647
Number of Sequences: 37544
Number of extensions: 314665
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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