Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B03
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.42 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   3.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   6.8  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   9.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    23   9.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   9.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 0.42
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -3

Query: 312  PMFEMPSQLPLVKRPH-----GRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVGNV 157
            P++ +P  +P+    H     G WPL  S + E   +  +  I  S CSKY+  GNV
Sbjct: 1289 PLYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEE--VCSVFNISKSVCSKYVQFGNV 1343


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 117 VQSVPGHXPARSLSTYPIVCNIGSHEYLI 31
           +Q+  G     SL+ YP V   GSH  ++
Sbjct: 641 IQNTDGSVTVNSLTVYPEVIGYGSHGTIV 669


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 102 GHXPARSLSTYPIVCNIGSH 43
           G+     L  YP++C++ SH
Sbjct: 530 GNVDLLHLHAYPVICSVSSH 549


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 183 SNYYTKSISTNRARGARDHGSLIV 254
           SN  TKS +TNR +G R   S ++
Sbjct: 2   SNPRTKSPNTNRGQGLRSERSALL 25


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 256 PSPVGSFNQG 285
           PSPVG+FN+G
Sbjct: 426 PSPVGTFNRG 435


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 125 KTYSLDKIALVTLPTIMYFE 184
           KT S +  +L TLPT +YF+
Sbjct: 198 KTNSKETTSLETLPTSIYFD 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,109
Number of Sequences: 5004
Number of extensions: 22258
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)